"""Tests for compile_concept, compile_all, write_index, append_log.

DB and LLM are fully mocked — no network or database access required.
"""

from __future__ import annotations

import textwrap
from pathlib import Path
from typing import Any
from unittest.mock import MagicMock

import pytest

from codex.wiki import (
    Claim,
    CompileReport,
    Concept,
    ConceptPage,
    _chunk_hash,
    _detect_conflicts,
    _inject_cross_refs,
    _parse_claims,
    _run_grounding_guard,
    append_log,
    compile_concept,
    write_index,
)

# ---------------------------------------------------------------------------
# Shared fixtures
# ---------------------------------------------------------------------------

FIXTURE_CHUNKS: list[dict[str, Any]] = [
    {
        "id": 1,
        "paper_id": "springborn-2008",
        "ord": 16,
        "content": (
            "For an ideal tetrahedron with dihedral angles the hyperbolic volume is "
            "V = L(gamma1) + L(gamma2) + L(gamma3). "
            "The volume function V0 is strictly concave on the angle domain."
        ),
        "bibkey": "Springborn2008",
        "dist": 0.31,
    },
    {
        "id": 2,
        "paper_id": "springborn-2008",
        "ord": 0,
        "content": (
            "A discrete conformal map is defined by logarithmic scale factors u_i "
            "at each vertex such that the edge lengths satisfy a compatibility condition."
        ),
        "bibkey": "Springborn2008",
        "dist": 0.35,
    },
]

FIXTURE_CONCEPT = Concept(
    slug="lobachevsky-function",
    title="Lobachevsky Function",
    aliases=["Milnor Lobachevsky", "Clausen function"],
    emphasis="Verwendung in hyperbolischen Volumenformeln (Springborn 2008).",
)

# Grounded LLM output: claim text is a substring of the fixture chunk
_GROUNDED_CLAIM = (
    "For an ideal tetrahedron with dihedral angles the hyperbolic volume is"
    " V = L(gamma1) + L(gamma2) + L(gamma3). [Springborn2008 #chunk 16]"
)
GROUNDED_LLM_OUTPUT = (
    "The Lobachevsky function L appears as the building block of hyperbolic volume.\n"
    + _GROUNDED_CLAIM
    + "\nThe volume function V0 is strictly concave on the angle domain."
    " [Springborn2008 #chunk 16]\n"
)

# Ungrounded LLM output: claim text not present in any chunk
UNGROUNDED_LLM_OUTPUT = textwrap.dedent(
    """\
    The closed form is L(x) = -integral from 0 to x of log|2 sin t| dt. [Springborn2008 #chunk 99]
    """
)


class MockLLM:
    """Deterministic mock LLM that returns a preset response."""

    def __init__(self, response: str) -> None:
        self._response = response

    def generate(self, prompt: str, model: str) -> str:
        return self._response


# ---------------------------------------------------------------------------
# _parse_claims
# ---------------------------------------------------------------------------


def test_parse_claims_finds_citation() -> None:
    """Claims with [BibKey #locator] format are parsed correctly."""
    md = "Some result. [Springborn2008 #chunk 16]"
    claims = _parse_claims(md)
    assert len(claims) == 1
    assert claims[0].bibkey == "Springborn2008"
    assert claims[0].locator == "chunk 16"


def test_parse_claims_no_citations() -> None:
    """Text without citation markers returns empty list."""
    md = "A standalone sentence with no citation."
    claims = _parse_claims(md)
    assert claims == []


def test_parse_claims_multiple() -> None:
    """Multiple citations in same text are all parsed."""
    md = "First claim. [Smith2020 #page 5]\nSecond claim. [Jones2019 #eq 3]\n"
    claims = _parse_claims(md)
    assert len(claims) == 2


def test_parse_claims_ignores_markdown_links() -> None:
    """Markdown hyperlinks like [text](https://example.com) are NOT parsed as claims."""
    md = "See the [related work](https://example.com) for details."
    claims = _parse_claims(md)
    assert claims == []


def test_parse_claims_ignores_multi_word_bibkey() -> None:
    """Multi-word 'bibkeys' (spaces inside) are not treated as real citations."""
    md = "Some text [not a bibkey here] and more."
    claims = _parse_claims(md)
    assert claims == []


# ---------------------------------------------------------------------------
# _run_grounding_guard
# ---------------------------------------------------------------------------


def test_grounding_guard_marks_grounded_claim() -> None:
    """A claim whose text appears in the cited chunk is marked grounded."""
    claim = Claim(
        text="the hyperbolic volume is V = L(gamma1) + L(gamma2) + L(gamma3)",
        bibkey="Springborn2008",
        locator="chunk 16",
    )
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is True


def test_grounding_guard_marks_ungrounded_claim() -> None:
    """A claim not present in the cited chunk is marked ungrounded."""
    claim = Claim(
        text="integral from 0 to x of log 2 sin t dt closed form definition",
        bibkey="Springborn2008",
        locator="chunk 99",
    )
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is False


def test_grounding_guard_ungrounded_when_bibkey_missing() -> None:
    """A claim citing a bibkey not in any chunk is ungrounded."""
    claim = Claim(text="some statement", bibkey="UnknownBib2000", locator="page 1")
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is False


def test_grounding_guard_adversarial_stopword_bypass() -> None:
    """Adversarial: stopword-3-gram matches are NOT sufficient for grounding.

    'the discrete conformal map' appears in the chunk, but this is a stopword
    phrase. The preceding hallucinated sentences contain NO content-5-gram
    present in the chunk → grounded=False.
    """
    # The adversarial text from the session-prompt review finding:
    adversarial_text = (
        "The Riemann hypothesis is proven by combining Hodge theory with quantum entanglement. "
        "Furthermore P=NP holds for hyperbolic tetrahedra. The discrete conformal map"
    )
    claim = Claim(
        text=adversarial_text,
        bibkey="Springborn2008",
        locator="chunk 0",
    )
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is False, (
        "Stopword 3-gram 'the discrete conformal map' must NOT ground a hallucinated claim"
    )


def test_grounding_guard_last_sentence_grounded_earlier_hallucination_ignored() -> None:
    """Only the last sentence is checked for grounding.

    If the last sentence IS grounded, the earlier hallucinated sentence is
    irrelevant (it has no citation → it won't be parsed as a Claim at all).
    This test verifies that a claim whose text = the last sentence grounds correctly.
    """
    # The last sentence of the claim text is directly grounded in the fixture chunk.
    grounded_sentence = "the hyperbolic volume is V = L(gamma1) + L(gamma2) + L(gamma3)"
    claim = Claim(
        text=grounded_sentence,
        bibkey="Springborn2008",
        locator="chunk 16",
    )
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is True, (
        "Last sentence with content-5-gram present in chunk must be grounded"
    )


def test_grounding_guard_robust_to_trailing_comma() -> None:
    """A faithful 5-word claim grounds despite a trailing comma (audit R-1).

    The chunk says "... the volume function V0 is strictly concave on the angle
    domain." Before edge-punctuation stripping, the claim token "concave," != the
    chunk token "concave", so the only content-5-gram failed to match and the
    claim was wrongly marked ungrounded.
    """
    claim = Claim(
        text="the volume function V0 is strictly concave,",
        bibkey="Springborn2008",
        locator="chunk 16",
    )
    result = _run_grounding_guard([claim], FIXTURE_CHUNKS)
    assert result[0].grounded is True


def test_grounding_guard_no_substring_bleed_across_tokens() -> None:
    """A 5-gram must match whole tokens, not bleed into a longer chunk word (audit C-6).

    The chunk contains 'subset'; a claim whose first token is 'set' must NOT ground
    by substring-matching the suffix of 'subset'.
    """
    chunks = [
        {
            "id": 99,
            "paper_id": "p",
            "ord": 0,
            "bibkey": "TestBib",
            "content": "the subset conformal map energy functional is minimized here",
        }
    ]
    claim = Claim(
        text="the set conformal map energy functional",
        bibkey="TestBib",
        locator="chunk 0",
    )
    result = _run_grounding_guard([claim], chunks)
    assert result[0].grounded is False


# ---------------------------------------------------------------------------
# _inject_cross_refs
# ---------------------------------------------------------------------------


def test_inject_cross_refs_replaces_title() -> None:
    """Occurrences of another concept's title are replaced with [[slug]]."""
    concepts = [
        Concept(
            slug="discrete-conformal-map",
            title="Discrete Conformal Map",
            aliases=[],
        ),
        FIXTURE_CONCEPT,
    ]
    text = "This is related to Discrete Conformal Map theory."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "[[discrete-conformal-map]]" in result


def test_inject_cross_refs_skips_current_slug() -> None:
    """The current concept's own title is not replaced."""
    concepts = [FIXTURE_CONCEPT]
    text = "The Lobachevsky Function is important."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "[[lobachevsky-function]]" not in result


def test_inject_cross_refs_replaces_alias() -> None:
    """Aliases are also replaced with [[slug]]."""
    concepts = [
        Concept(
            slug="circle-packing",
            title="Circle Packing",
            aliases=["Koebe-Andreev-Thurston", "circle pattern"],
        ),
        FIXTURE_CONCEPT,
    ]
    text = "The Koebe-Andreev-Thurston theorem gives a packing."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "[[circle-packing]]" in result


def test_inject_cross_refs_skips_inline_code() -> None:
    """Concept titles inside backtick inline-code spans are NOT replaced."""
    concepts = [
        Concept(
            slug="circle-packing",
            title="circle-packing",
            aliases=[],
        ),
        FIXTURE_CONCEPT,
    ]
    # The term "circle-packing" appears both bare (should be replaced)
    # and inside backticks (should NOT be replaced).
    text = "Use `circle-packing` for this. See also circle-packing theory."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "`circle-packing`" in result  # inline-code preserved
    assert "[[circle-packing]]" in result  # bare occurrence replaced


def test_inject_cross_refs_skips_math_spans() -> None:
    """Concept names inside LaTeX math are NOT rewritten to [[slug]] links (audit R-9)."""
    concepts = [
        Concept(slug="energy", title="Energy", aliases=[]),
        FIXTURE_CONCEPT,
    ]
    text = "Prose Energy here. Math $x = Energy^2$ and inline \\(Energy\\) stay literal."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "$x = Energy^2$" in result  # display/inline $...$ math untouched
    assert "\\(Energy\\)" in result  # \(...\) math untouched
    assert "Prose [[energy]] here." in result  # prose occurrence still linked


def test_inject_cross_refs_full_list_even_when_single_concept() -> None:
    """Cross-ref injection uses the full concept list, not just the compiled concept."""
    concepts = [
        Concept(slug="circle-packing", title="Circle Packing", aliases=[]),
        Concept(slug="discrete-conformal-map", title="Discrete Conformal Map", aliases=[]),
        FIXTURE_CONCEPT,
    ]
    # Compiling lobachevsky-function only; text mentions the other two concepts
    text = "Discrete Conformal Map is used with Circle Packing."
    result = _inject_cross_refs(text, concepts, current_slug="lobachevsky-function")
    assert "[[circle-packing]]" in result
    assert "[[discrete-conformal-map]]" in result


# ---------------------------------------------------------------------------
# compile_concept (full mock)
# ---------------------------------------------------------------------------


@pytest.fixture
def mock_retrieve(monkeypatch: pytest.MonkeyPatch) -> None:
    """Patch _retrieve_chunks to return deterministic fixture chunks."""
    monkeypatch.setattr(
        "codex.wiki._retrieve_chunks",
        lambda queries, top_k: FIXTURE_CHUNKS,
    )


@pytest.fixture
def mock_formulas(monkeypatch: pytest.MonkeyPatch) -> None:
    """Patch _try_embed_formulas to be a no-op (F-09 not present)."""
    monkeypatch.setattr("codex.wiki._try_embed_formulas", lambda concept, chunks: None)


@pytest.fixture
def mock_settings(monkeypatch: pytest.MonkeyPatch, tmp_path: Path) -> Path:
    """Patch get_settings to return a settings pointing at tmp_path."""
    from codex.config import Settings

    wiki_path = tmp_path / "wiki"
    wiki_path.mkdir()

    mock = MagicMock(spec=Settings)
    mock.wiki_dir = str(wiki_path)
    mock.wiki_llm_model = "test-model"
    mock.wiki_llm_url = None
    mock.ollama_base_url = "http://localhost:11434"
    mock.wiki_top_k = 6
    mock.wiki_min_grounding_rate = 0.5

    monkeypatch.setattr("codex.wiki.get_settings", lambda: mock)
    monkeypatch.setattr("codex.cli.get_settings", lambda: mock, raising=False)
    return wiki_path


def test_compile_concept_returns_concept_page(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """compile_concept returns a ConceptPage with non-empty markdown."""
    llm = MockLLM(GROUNDED_LLM_OUTPUT)
    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=llm, wiki_dir=mock_settings
    )
    assert isinstance(page, ConceptPage)
    assert page.concept.slug == "lobachevsky-function"
    assert len(page.markdown) > 0


def test_compile_concept_has_chunk_hash(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """Compiled page has a non-empty chunk_hash."""
    llm = MockLLM(GROUNDED_LLM_OUTPUT)
    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=llm, wiki_dir=mock_settings
    )
    assert len(page.chunk_hash) == 64  # SHA-256 hex


def test_compile_concept_grounded_claim_not_flagged(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """A grounded claim does NOT receive the ⚠ marker in the output markdown."""
    llm = MockLLM(GROUNDED_LLM_OUTPUT)
    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=llm, wiki_dir=mock_settings
    )
    # When all claims are grounded, no ⚠ in markdown
    # (may still have 0 ⚠ if claims found; just check no false positive for grounded)
    grounded = [c for c in page.claims if c.grounded]
    for claim in grounded:
        assert claim.grounded is True


def test_compile_concept_ungrounded_claim_marked(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """An ungrounded claim is marked ⚠ in the page markdown."""
    llm = MockLLM(UNGROUNDED_LLM_OUTPUT)
    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=llm, wiki_dir=mock_settings
    )
    ungrounded = [c for c in page.claims if not c.grounded]
    if ungrounded:
        assert "⚠" in page.markdown


def test_compile_concept_header_present(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """Page markdown starts with an H1 header for the concept title."""
    llm = MockLLM(GROUNDED_LLM_OUTPUT)
    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=llm, wiki_dir=mock_settings
    )
    assert page.markdown.startswith("# Lobachevsky Function")


# ---------------------------------------------------------------------------
# write_index
# ---------------------------------------------------------------------------


def test_index_creates_index_md(
    mock_settings: Path,
) -> None:
    """write_index creates wiki/index.md."""
    pages = [
        ("discrete-conformal-map", "Discrete Conformal Map"),
        ("circle-packing", "Circle Packing"),
    ]
    write_index(pages, wiki_dir=mock_settings)
    index_path = mock_settings / "index.md"
    assert index_path.exists()


def test_index_contains_links(
    mock_settings: Path,
) -> None:
    """wiki/index.md contains [[slug]] links for each page."""
    pages = [
        ("discrete-conformal-map", "Discrete Conformal Map"),
        ("circle-packing", "Circle Packing"),
    ]
    write_index(pages, wiki_dir=mock_settings)
    content = (mock_settings / "index.md").read_text(encoding="utf-8")
    assert "[[discrete-conformal-map]]" in content
    assert "[[circle-packing]]" in content


def test_index_contains_header(
    mock_settings: Path,
) -> None:
    """wiki/index.md starts with a # Wiki Index header."""
    write_index([], wiki_dir=mock_settings)
    content = (mock_settings / "index.md").read_text(encoding="utf-8")
    assert content.startswith("# Wiki Index")


# ---------------------------------------------------------------------------
# append_log
# ---------------------------------------------------------------------------


def test_log_append_creates_log_md(
    mock_settings: Path,
) -> None:
    """append_log creates wiki/log.md if it does not exist."""
    report = CompileReport(
        compiled=["lobachevsky-function"],
        skipped=[],
        ungrounded=[],
    )
    append_log(report, wiki_dir=mock_settings)
    log_path = mock_settings / "log.md"
    assert log_path.exists()


def test_log_append_does_not_overwrite(
    mock_settings: Path,
) -> None:
    """Two calls to append_log accumulate entries — older entry is NOT overwritten."""
    report1 = CompileReport(compiled=["first-concept"])
    report2 = CompileReport(compiled=["second-concept"])

    append_log(report1, wiki_dir=mock_settings)
    append_log(report2, wiki_dir=mock_settings)

    content = (mock_settings / "log.md").read_text(encoding="utf-8")
    assert "first-concept" in content
    assert "second-concept" in content


def test_log_append_records_ungrounded(
    mock_settings: Path,
) -> None:
    """Ungrounded claims appear in the log entry."""
    report = CompileReport(
        compiled=["lobachevsky-function"],
        ungrounded=[("lobachevsky-function", "some ungrounded claim text")],
    )
    append_log(report, wiki_dir=mock_settings)
    content = (mock_settings / "log.md").read_text(encoding="utf-8")
    assert "some ungrounded claim text" in content
    assert "⚠" in content


def test_log_append_records_skipped(
    mock_settings: Path,
) -> None:
    """Skipped slugs appear in the log entry."""
    report = CompileReport(
        compiled=[],
        skipped=["circle-packing"],
    )
    append_log(report, wiki_dir=mock_settings)
    content = (mock_settings / "log.md").read_text(encoding="utf-8")
    assert "circle-packing" in content


# ---------------------------------------------------------------------------
# Audit C-4: zero-citation pages must NOT bypass the quarantine
# ---------------------------------------------------------------------------


def test_zero_citation_page_is_quarantined_not_published(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """A confident-but-uncited LLM response yields zero parseable claims
    (grounding_rate 0.0). It must be quarantined — not written to wiki/ and
    marked compiled. Regression for audit C-4: the old ``total_claims > 0``
    guard let zero-claim (and LLM-outage empty) pages fall through to wiki/.
    """
    from codex.wiki import compile_all

    (mock_settings / "concepts.yaml").write_text(
        textwrap.dedent(
            """\
            concepts:
              - slug: lobachevsky-function
                title: Lobachevsky Function
                aliases: [Milnor Lobachevsky]
            """
        ),
        encoding="utf-8",
    )
    # No [BibKey] citations anywhere → zero claims → grounding_rate 0.0.
    uncited = MockLLM(
        "The Lobachevsky function is obviously central to all of geometry. "
        "Every result follows from it. This paragraph cites nothing at all."
    )

    report = compile_all(changed_only=False, llm=uncited, output_dir=str(mock_settings))

    assert "lobachevsky-function" in report.quarantined
    assert "lobachevsky-function" not in report.compiled
    assert not (mock_settings / "lobachevsky-function.md").exists()


# ---------------------------------------------------------------------------
# Idempotency: second compile without chunk change → no rewrite
# ---------------------------------------------------------------------------


def test_idempotent_no_rewrite_when_unchanged(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
    monkeypatch: pytest.MonkeyPatch,
) -> None:
    """Second compile_all with unchanged chunks skips the concept (changed_only=True)."""
    from codex.wiki import compile_all

    call_count = 0
    original_compile = compile_concept

    def counting_compile(concept: Concept, chunks: list[Any], **kwargs: Any) -> ConceptPage:
        nonlocal call_count
        call_count += 1
        return original_compile(concept, chunks, **kwargs)

    monkeypatch.setattr("codex.wiki.compile_concept", counting_compile)

    # Write concepts.yaml into wiki_dir
    yaml_content = textwrap.dedent(
        """\
        concepts:
          - slug: lobachevsky-function
            title: Lobachevsky Function
            aliases: [Milnor Lobachevsky]
        """
    )
    (mock_settings / "concepts.yaml").write_text(yaml_content, encoding="utf-8")

    llm = MockLLM(GROUNDED_LLM_OUTPUT)

    # First compile: should call compile_concept
    compile_all(changed_only=True, llm=llm, output_dir=str(mock_settings))
    first_count = call_count

    # Second compile with same chunks: should skip
    compile_all(changed_only=True, llm=llm, output_dir=str(mock_settings))
    second_count = call_count

    assert first_count >= 1, "First run should compile at least once"
    assert second_count == first_count, "Second run should not recompile (unchanged chunks)"


def test_force_all_recompiles_even_when_unchanged(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
    monkeypatch: pytest.MonkeyPatch,
) -> None:
    """compile_all with changed_only=False recompiles regardless of hash."""
    from codex.wiki import compile_all

    call_count = 0
    original_compile = compile_concept

    def counting_compile(concept: Concept, chunks: list[Any], **kwargs: Any) -> ConceptPage:
        nonlocal call_count
        call_count += 1
        return original_compile(concept, chunks, **kwargs)

    monkeypatch.setattr("codex.wiki.compile_concept", counting_compile)

    yaml_content = textwrap.dedent(
        """\
        concepts:
          - slug: lobachevsky-function
            title: Lobachevsky Function
            aliases: [Milnor Lobachevsky]
        """
    )
    (mock_settings / "concepts.yaml").write_text(yaml_content, encoding="utf-8")

    llm = MockLLM(GROUNDED_LLM_OUTPUT)

    compile_all(changed_only=True, llm=llm, output_dir=str(mock_settings))
    compile_all(changed_only=False, llm=llm, output_dir=str(mock_settings))

    assert call_count >= 2, "Force --all should recompile even when unchanged"


# ---------------------------------------------------------------------------
# _chunk_hash
# ---------------------------------------------------------------------------


def test_chunk_hash_is_stable() -> None:
    """Same chunks produce the same hash each time."""
    h1 = _chunk_hash(FIXTURE_CHUNKS)
    h2 = _chunk_hash(FIXTURE_CHUNKS)
    assert h1 == h2
    assert len(h1) == 64


def test_chunk_hash_differs_on_content_change() -> None:
    """Different content produces different hash."""
    modified = [dict(FIXTURE_CHUNKS[0], content="completely different content"), FIXTURE_CHUNKS[1]]
    h1 = _chunk_hash(FIXTURE_CHUNKS)
    h2 = _chunk_hash(modified)
    assert h1 != h2


# ---------------------------------------------------------------------------
# LLM error handling (Fix 4)
# ---------------------------------------------------------------------------


def test_compile_concept_llm_unavailable_returns_empty_page(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """When LLM raises an exception, compile_concept returns an empty ConceptPage (no crash)."""

    class FailingLLM:
        def generate(self, prompt: str, model: str) -> str:
            raise ConnectionError("Ollama unavailable")

    page = compile_concept(
        FIXTURE_CONCEPT, FIXTURE_CHUNKS, top_k=6, llm=FailingLLM(), wiki_dir=mock_settings
    )
    assert isinstance(page, ConceptPage)
    assert page.markdown == ""
    assert page.claims == []
    assert page.chunk_hash != ""  # hash still computed from chunks


# ---------------------------------------------------------------------------
# Quarantine (Fix 2)
# ---------------------------------------------------------------------------


def test_compile_all_quarantines_low_grounding_page(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """A page with grounding rate < 0.5 goes to wiki/draft/ not wiki/."""
    from codex.wiki import compile_all

    (mock_settings / "concepts.yaml").write_text(
        textwrap.dedent(
            """\
            concepts:
              - slug: lobachevsky-function
                title: Lobachevsky Function
                aliases: [Milnor Lobachevsky]
            """
        ),
        encoding="utf-8",
    )

    # Ungrounded LLM output → all claims ungrounded → grounding rate 0.0 < 0.5
    llm = MockLLM(UNGROUNDED_LLM_OUTPUT)
    report = compile_all(changed_only=False, llm=llm, output_dir=str(mock_settings))

    draft_dir = mock_settings / "draft"
    assert draft_dir.exists(), "draft/ directory should have been created"
    draft_pages = list(draft_dir.glob("*.md"))
    assert len(draft_pages) >= 1, "Quarantined page should exist in wiki/draft/"
    assert "lobachevsky-function" in report.quarantined
    # Normal wiki/ path must NOT exist for this page
    assert not (mock_settings / "lobachevsky-function.md").exists()


def test_compile_all_does_not_quarantine_grounded_page(
    mock_retrieve: None,
    mock_formulas: None,
    mock_settings: Path,
) -> None:
    """A page with grounding rate >= 0.5 is written to wiki/, not quarantined."""
    from codex.wiki import compile_all

    (mock_settings / "concepts.yaml").write_text(
        textwrap.dedent(
            """\
            concepts:
              - slug: lobachevsky-function
                title: Lobachevsky Function
                aliases: [Milnor Lobachevsky]
            """
        ),
        encoding="utf-8",
    )

    llm = MockLLM(GROUNDED_LLM_OUTPUT)
    report = compile_all(changed_only=False, llm=llm, output_dir=str(mock_settings))

    assert "lobachevsky-function" not in report.quarantined
    assert (mock_settings / "lobachevsky-function.md").exists()


# ---------------------------------------------------------------------------
# Conflict detection (Fix 9)
# ---------------------------------------------------------------------------


def test_detect_conflicts_finds_adversative_keywords() -> None:
    """Chunks from different bibkeys both containing adversative keywords → conflict."""
    chunks = [
        {
            "id": 10,
            "paper_id": "p1",
            "ord": 0,
            "content": "The discrete map works well, but diverges in degenerate cases.",
            "bibkey": "Smith2020",
        },
        {
            "id": 11,
            "paper_id": "p2",
            "ord": 0,
            "content": "However, the approach from Jones is more stable.",
            "bibkey": "Jones2019",
        },
    ]
    conflicts = _detect_conflicts("test-concept", chunks)
    assert len(conflicts) >= 1
    slugs, bk1s, bk2s = zip(*conflicts, strict=True)
    assert "test-concept" in slugs


def test_detect_conflicts_no_conflict_when_single_bibkey() -> None:
    """Only one bibkey → no conflict possible."""
    conflicts = _detect_conflicts("test-concept", FIXTURE_CHUNKS)
    assert conflicts == []


# ---------------------------------------------------------------------------
# append_log quarantine rendering
# ---------------------------------------------------------------------------


def test_log_append_records_quarantined(
    mock_settings: Path,
) -> None:
    """Quarantined slugs appear in the log entry."""
    report = CompileReport(
        compiled=[],
        quarantined=["some-concept"],
    )
    append_log(report, wiki_dir=mock_settings)
    content = (mock_settings / "log.md").read_text(encoding="utf-8")
    assert "some-concept" in content
    assert "QUARANTINED" in content