quality: 4 more gates + dependency audit; full --fast sweep 10/10 green
This commit closes the structural-tests work on PR #18. Every gate in `run-all.sh --fast` now passes end-to-end on the canonical dev machine. New gates ───────── 1. shellcheck (scripts/quality/shellcheck.sh) * Scans every `scripts/**/*.sh` at severity=warning+ * 16 scripts inspected; cleanup pass took the tree from 7 findings (SC2164 + SC2034) to 0 findings. 2. cppcheck (scripts/quality/cppcheck.sh) * Complementary static analyser to clang-tidy; different heuristics, fewer false-positives on heavy CGAL/Eigen templates. * Default severity warning+, --strict adds style, --all = everything. * Suppresses 4 noise classes (missingIncludeSystem, etc.) explicitly. 3. .editorconfig * Cross-IDE fallback for editors that don't honour clang-format. * Covers Markdown (preserve trailing whitespace), Python, YAML, JSON, shell, Makefile (tabs) — the file types clang-format doesn't cover. 4. CONFORMALLAB_WARNINGS_AS_ERRORS CMake option * Off by default → regular builds don't break on new GCC warnings. * `-DCONFORMALLAB_WARNINGS_AS_ERRORS=ON` adds `-Werror`, intended for CI promotion-track and sanitizer runs. Dependency audit (doc/architecture/dependencies.md) ──────────────────────────────────────────────────── New single-source-of-truth document listing: * what the library requires (Eigen + CGAL + Boost — all header-only) * what tests require (auto-fetched GTest, no system install) * what each quality tool is for, install command per OS, and behaviour when missing (each gate exits 2 = SKIP, run-all recognises this and continues) * a verification recipe that strips PATH down and shows the library still configures + builds + tests cleanly with zero quality tools installed. run-all.sh enhanced ─────────────────── * Recognises "tool not in PATH" → SKIP (not FAIL). * Summary now reports `passed / skipped / failed` separately. Bug fixes uncovered by the sweep ──────────────────────────────── * sanitizers.sh: gtest_discover_tests ran the ASan-instrumented binary at build time and aborted → added `-DCMAKE_GTEST_DISCOVER_TESTS_DISCOVERY_MODE=PRE_TEST` to defer discovery to ctest invocation. Now 23/23 sanitizer-instrumented tests pass. * clang-tidy.sh on macOS: brew-installed clang-tidy couldn't find Apple SDK system headers (<cmath>, <complex>, …) → added `--extra-arg=-isysroot $(xcrun --show-sdk-path)` on Darwin. * clang-tidy.sh: needed `-DWITH_CGAL_TESTS=ON` in compile_commands generation so CGAL include paths are part of at least one compile entry. Now resolves CGAL/Surface_mesh.h etc. * clang-tidy.sh: viewer-only headers (`viewer_utils.h`, `mesh_utils.hpp`) excluded — they need `WITH_VIEWER=ON` + system GLFW/libigl that the lint build doesn't drag in. * `.codespellrc`: extended ignore list (recognise, signalled, modelled, travelled, …) for British-English consistency across own writing. Final state — local quality block on this commit, this branch: ✅ License headers (66/66 carry MIT SPDX) ✅ CGAL conventions (0/6 violations on 6 CGAL headers) ✅ clang-format drift (0 drift) ✅ cmake-format/-lint (0 drift, 0 lint findings) ✅ codespell (0 typos in scope) ✅ shellcheck (0 findings across 16 .sh files) ✅ cppcheck (warning+ severity clean) ✅ Markdown links (122/122 resolve) ✅ Sanitizers (ASan+UBSan) (23/23 fast tests pass) ✅ clang-tidy (35 headers inspected, 0 findings) Library standalone-ness verified: env -i PATH=... cmake -S code -B /tmp/build-standalone cmake --build /tmp/build-standalone --target conformallab_tests ctest -E '^cgal\.' → all green Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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@@ -23,6 +23,8 @@ consistency + markdown links + end-to-end smoke via `try_it.sh`).
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| `clang-format.sh` | every C++ source matches `.clang-format` (dry-run by default; `--fix` to apply) | ~2 s | `clang-format` ≥ 15 |
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| `cmake-format.sh` | every `CMakeLists.txt` matches `.cmake-format.yaml` + passes `cmake-lint` | ~2 s | `cmake-format` (pip: cmakelang) |
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| `codespell.sh` | typo check across docs + source comments + script messages | ~1 s | `codespell` |
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| `shellcheck.sh` | static analysis of every `scripts/**/*.sh` | ~1 s | `shellcheck` |
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| `cppcheck.sh` | second-opinion static analyser over `code/include/` | ~5 s | `cppcheck` |
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| `../check-markdown-links.py` | every internal markdown link resolves | ~2 s | `python3` |
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### Correctness / quality gates (run before tagging or reviewer demos)
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