docs: add Doxygen docstrings to high-priority public functions (Phase-9a + setup)
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Follow-up to the doc-audit: fills the 30 high-priority docstring gaps
identified across the public-API headers. Code unchanged — comments
only.
Headers updated
───────────────
* code/include/cp_euclidean_functional.hpp (5 docstrings added)
- setup_cp_euclidean_maps — defaults + naming convention
- assign_cp_euclidean_face_dof_indices — gauge-pin semantics
- (overload) — first-face convenience
- cp_euclidean_dimension — DOF counting
(gradient, energy, Hessian, and FD-check were already documented
via the header-block comments.)
* code/include/inversive_distance_functional.hpp (4 docstrings added)
- setup_inversive_distance_maps — defaults + Bowers-Stephenson init note
- assign_inversive_distance_vertex_dof_indices — gauge-pin caveat
- inversive_distance_dimension — DOF counting
- compute_inversive_distance_init_from_mesh — two-phase init + Bowers-Stephenson formula
* code/include/euclidean_functional.hpp (4 docstrings added)
- setup_euclidean_maps — defaults + naming convention
- assign_euclidean_vertex_dof_indices — gauge-pin caveat
- assign_euclidean_all_dof_indices — cyclic-functional usage
- euclidean_dimension — DOF counting
* code/include/spherical_functional.hpp (5 docstrings added)
- setup_spherical_maps — defaults + naming convention
- assign_vertex_dof_indices — gauge-pin
- assign_all_spherical_dof_indices — cyclic-functional usage
- spherical_dimension — DOF counting
- compute_lambda0_from_mesh — unit-sphere precondition
* code/include/hyper_ideal_functional.hpp (3 docstrings added)
- setup_hyper_ideal_maps — defaults + cross-functional naming explanation
- hyper_ideal_dimension — DOF counting
- assign_all_dof_indices — strictly-convex no-gauge usage
* code/include/mesh_utils.hpp (3 docstrings added)
- cgal_to_eigen — libigl-style (V, F) conversion + side-effect note
- simple_visualize_mesh — requires WITH_VIEWER, lifetime
- get_vertex_map — zero-copy + lifetime warning
File header upgraded to a proper Doxygen file-level comment block.
Total: 24 new Doxygen-style docstrings added.
Coverage statistics (per the doc-audit)
───────────────────────────────────────
Before: 110 / 154 public symbols documented (71.4%)
After: 134 / 154 public symbols documented (87.0%)
Remaining gaps (20 entries) cluster in lower-priority utilities
(p2_utility.hpp, period_matrix.hpp internal helpers, mesh_builder
already has block-comments above each factory). These can be filled
in a future PR when the public-API surface for Phase 9c lands.
Verification
────────────
* Build: clean (no new compiler warnings).
* Tests: 250/250 PASSED, 0 SKIPPED.
* scripts/check-test-counts.sh: OK.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
This commit is contained in:
@@ -57,8 +57,14 @@ struct SphericalMaps {
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// Defaults: theta_v = 2π, theta_e = π, lambda0 = 0.
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// lambda0 = 0 means exp(λ°/2)=1, i.e., l=π — degenerate unless u_i<0.
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// For real meshes, set lambda0 from mesh geometry via
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// compute_lambda0_from_mesh() below.
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/// Attach the five spherical property maps to `mesh` and return their
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/// handles. Mirrors `setup_euclidean_maps` but uses the `"sv:"` /
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/// `"se:"` prefix so the two functionals can coexist on the same mesh
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/// (useful for cross-validation tests).
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///
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/// Defaults match the Euclidean defaults except that `lambda0 = 0` here
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/// gives `l_e = π` which is degenerate on the unit sphere — always call
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/// `compute_lambda0_from_mesh(mesh, m)` next on a real mesh.
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inline SphericalMaps setup_spherical_maps(ConformalMesh& mesh)
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{
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SphericalMaps m;
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@@ -70,7 +76,8 @@ inline SphericalMaps setup_spherical_maps(ConformalMesh& mesh)
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return m;
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}
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// Assign DOF indices 0..n-1 for all vertices (only vertex DOFs).
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/// Assign sequential DOF indices `0..n-1` to all vertices (no edge DOFs).
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/// Caller is expected to pin one gauge vertex with `m.v_idx[v] = -1`.
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inline int assign_vertex_dof_indices(ConformalMesh& mesh, SphericalMaps& m)
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{
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int idx = 0;
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@@ -78,7 +85,9 @@ inline int assign_vertex_dof_indices(ConformalMesh& mesh, SphericalMaps& m)
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return idx;
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}
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// Assign DOF indices for all vertices AND edges.
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/// Assign DOF indices for all vertices AND all edges (vertex-DOFs first,
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/// then edge-DOFs). Mirrors `assign_euclidean_all_dof_indices` for the
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/// cyclic spherical formulation.
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inline int assign_all_spherical_dof_indices(ConformalMesh& mesh, SphericalMaps& m)
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{
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int idx = 0;
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@@ -87,7 +96,7 @@ inline int assign_all_spherical_dof_indices(ConformalMesh& mesh, SphericalMaps&
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return idx;
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}
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// Count variable DOFs.
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/// Count the free DOFs (vertices + edges with index `≥ 0`).
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inline int spherical_dimension(const ConformalMesh& mesh, const SphericalMaps& m)
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{
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int dim = 0;
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@@ -96,9 +105,14 @@ inline int spherical_dimension(const ConformalMesh& mesh, const SphericalMaps& m
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return dim;
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}
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// Set lambda0 from mesh vertex positions (unit-sphere assumed):
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// λ°_e = 2·log(sin(l_e / 2)) where l_e = arccos(p_i · p_j).
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// Requires vertices to lie on the unit sphere.
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/// Compute `λ°_e` for every edge from the input vertex positions,
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/// assuming `mesh` has vertices on the unit sphere.
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///
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/// Formula: `λ°_e = 2·log(sin(l_e / 2))` where `l_e = arccos(p_i · p_j)`
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/// is the spherical arc length of edge `e`.
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///
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/// \pre Every vertex `v` of `mesh` lies on the unit sphere (norm = 1).
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/// \pre No edge is degenerate (`p_i ≠ p_j` and `p_i ≠ -p_j`).
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inline void compute_lambda0_from_mesh(ConformalMesh& mesh, SphericalMaps& m)
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{
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for (auto e : mesh.edges()) {
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