Commit Graph

21 Commits

Author SHA1 Message Date
Tarik Moussa
02fb80ee3e Phase 7.5: Doxygen infrastructure + Phase 8 design freeze
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Adds the Doxygen documentation pipeline as the bridge from Phase 7
(porting complete) to Phase 8 (CGAL package). Also captures the
strategic Phase 8 decisions taken on 2026-05-19.

Infrastructure
──────────────
* Doxyfile         — CGAL-style minimal configuration, HTML-only,
                     INPUT=code/include + doc/, excludes deps/ and
                     macOS Finder duplicates
* code/CMakeLists  — `doc` target via find_package(Doxygen QUIET);
                     silently disabled if Doxygen is not installed
* README           — `cmake --build build --target doc` instructions
* .gitignore       — exclude doc/doxygen/ output

Phase 8 strategic decisions (recorded in doc/api/cgal-package.md)
────────────────────────────────────────────────────────────────
* Submission to CGAL: pre-submission-ready, 12+ months horizon, MIT preserved
* Mesh-type flexibility: generic FaceGraph + HalfedgeGraph
* Parameter style: CGAL Named Parameters
* Default kernel: Simple_cartesian<double> (status quo)
* Architecture: 3-layer wrapper, no algorithm duplication
* Acceptance test: Phase 9a (Inversive-Distance) as first new client

CLAUDE.md updated with a compact Phase 8 decision table.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 19:56:22 +02:00
Tarik Moussa
e958afbd19 chore: translate all German text to English across code, docs, and CI
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Unified the codebase language to English throughout. German text appeared
in code comments, test file headers, CI step names, and several markdown
documents. All natural-language text is now English; proper nouns
(Institut für Mathematik, Technische Universität Berlin) are unchanged.

Files changed:
- .gitea/workflows/cpp-tests.yml  — CI step names and job comments
- code/include/mesh_utils.hpp     — inline comment
- code/tests/cgal/CMakeLists.txt  — section comment block
- code/tests/cgal/test_geometry_utils.cpp — full file header + all test comments
- doc/math/references.md          — geometry-central section
- doc/math/validation.md          — Section 9 (geometry-central cross-validation)
- doc/roadmap/phases.md           — Optional geometry-central track (GC-1/2/3)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 00:09:09 +02:00
Tarik Moussa
52f61cec36 Update all doc test counts to 176 CGAL tests, 0 skipped
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Propagates the new baseline (176 passed, 0 skipped) established by the
GradientCheck_Hessian implementation across all documentation files that
previously referenced the stale counts (174/173/170 + 1-2 skips).

Files updated: CLAUDE.md, doc/api/tests.md, doc/contributing.md,
doc/getting-started.md, doc/math/novelty-statement.md,
doc/math/validation.md, doc/math/validation-protocol.md, scripts/try_it.sh

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 23:33:31 +02:00
Tarik Moussa
88a99d8bd1 fix: correct 16 inconsistencies found by consistency audit
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Math / code:
- layout.hpp: add explanatory comment for Möbius deck transformation
  (from_three with z1=w1, z2=w2 encodes T fixing cut-edge endpoints)
- layout.hpp: document spherical holonomy limitation — Vector2d stores
  only (x,y) of 3-D position diff; full SO(3) representation deferred

Gradient sign convention (CLAUDE.md was wrong):
- Euclidean and Spherical both use G_v = Θ_v − actual (target minus actual)
- HyperIdeal uses G_v = actual − Θ_v
- Hessian sign differs: Euclidean PSD, Spherical NSD → −H, HyperIdeal PSD

Test counts (were inconsistent across all files):
- Actual: 176 CGAL tests, 2 GTEST_SKIP (not 173/170/174, not 1 skip)
- The 2 skips are EuclideanFunctional + SphericalFunctional Hessian gradient
  checks (Java @Ignore ports) — not HyperIdeal Hessian as previously stated
- doc/api/tests.md: add missing SmokeEuclidean suite (3 tests),
  EuclideanLayout (2), SphericalLayout (1), fix GaussBonnet 8→12,
  MeshIO 9→6, Layout 8→6, EuclideanFunctional 11→12,
  HomologyGenerators no longer a GTEST_SKIP stub (live test on brezel2.obj)
- doc/roadmap/phases.md: Phase 7 cumulative 158→176 tests
- doc/roadmap/phases.md: Phase 3 clarified — HyperIdeal Hessian is FD
- CLAUDE.md: suite count 28→34, test ref 173+36→174+36
- scripts/try_it.sh: expected output 173/1 skipped → 174/2 skipped

CI table (CLAUDE.md):
- test-cgal now triggers on pull requests only (not main/dev pushes)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 23:24:44 +02:00
Tarik Moussa
7edf699ac2 test/docs: Scalability Smoke Tests + Komplexitätsdokumentation
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test_scalability_smoke.cpp (3 neue Tests → 176 CGAL-Tests gesamt):
  SmokeEuclidean.CatHead_SmallOpen   — V=131,  Newton 3 iter, <1ms
  SmokeEuclidean.Brezel_LargeGenus2  — V=6910, Newton 3 iter, 69ms (Apple M)
  SmokeEuclidean.Brezel2_Genus2_CutGraph — V=2622, Cut Graph 10ms, 4 Nähte
  - Korrektheit-Assertions (iter<30, ||G||<1e-8), kein Timing-Assert (CI-stabil)
  - Informative Ausgabe: iter, Residuum, Laufzeit als stdout-Print
  - Korrektur: brezel.obj ist Genus-2 (χ=−2), nicht Genus-1 (Namensgebung
    aus Java-Original übernommen, nicht topologisch)
  - Perturbation x0=−0.05 damit Newton tatsächlich iteriert

doc/math/complexity.md (neu):
  - O()-Analyse aller Pipeline-Schritte tabellarisch
  - Gemessene Timings auf echten Meshes (Apple M, Release, Single-Thread)
  - HyperIdeal-FD-Hessian als bekannter Bottleneck dokumentiert
  - Skalierungsprojektion bis V=100K
  - Speicherverbrauch-Tabelle
  - Reproduzierbare Messanleitung

README.md + CLAUDE.md: Testzähler 173→176, complexity.md verlinkt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 23:05:22 +02:00
Tarik Moussa
c5efc3d3cc chore/docs: Onboarding-Sprint für externe Mathematiker
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- LICENSE: Copyright Tarik Moussa <Tarik.moussa95@gmail.com> (war user2595)
- CITATION.cff: maschinenlesbares Zitat mit 3 Primärreferenzen (Sechelmann 2016,
  Springborn 2020, Bobenko–Springborn 2004)
- scripts/try_it.sh: Clone→Build→Test→Beispiel in einem Skript
- doc/math/software-landscape.md: Landkarte aller relevanten Tools,
  Problem-A vs. Problem-B Abgrenzung, vollständige Feature-Matrix
- doc/math/novelty-statement.md: formales Alleinstellungsmerkmal,
  Zielgruppen, was dieses Projekt nicht ist
- code/CMakeLists.txt: cmake --install Target für Header-only-Library
- doc/getting-started.md: Testzähler 158→173, Beispiel-Output, try_it.sh
- README.md: CI/License/DOI-Badges, Cite-Abschnitt, Issue-Tracker-Link,
  Copyright, neue Doku-Einträge software-landscape + novelty-statement

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 20:35:46 +02:00
Tarik Moussa
b02f08625c docs: detaillierter geometry-central Vergleich (Abgrenzung, Adoption, Mehrwert)
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Neues Dokument doc/architecture/geometry-central-comparison.md:
- Gemeinsame mathematische Grundlage (Bobenko–Springborn 2004, Springborn 2020)
- Algorithmenvergleich: Newton (fixed triangulation) vs. Ptolemäische Flips
- Vollständige Feature-Matrix: was existiert wo, was fehlt wo
- Klare Adoptionsempfehlungen: Ptolemäischer Pre-Conditioner ja (GC-2),
  intrinsische Triangulierungen als Architektur nein (Begründung)
- 5 wissenschaftliche Mehrwerte: Kreuz-Validierung, Konvergenzstudie,
  Period-Matrix als Alleinstellungsmerkmal, Sphärische Geometrie, Springborn 2020
- Praktischer Roadmap GC-1 bis GC-paper mit Aufwandsschätzungen
- README-Eintrag ergänzt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 02:06:46 +02:00
Tarik Moussa
d25f3cafe6 docs: geometry-central Vergleich als optionalen Track einarbeiten
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- phases.md: neue Sektion "Optional/Hypothetisch — geometry-central
  Cross-Comparison" mit GC-1 (Output-Vergleich, sofort möglich),
  GC-2 (Intrinsic Delaunay Pre-Conditioning, nach Phase 8) und
  GC-3 (Ptolemäischer Flip-Solver, hypothetisch Phase 10+)
- validation.md: neuer Abschnitt 9 mit Vergleichstabelle, Normalisierungs-
  abgleich, Zeitplan und Springborn-2020-Einordnung
- references.md: Gillespie–Springborn–Crane SIGGRAPH 2021 + Sharp 2019
  als geometry-central-Referenzen eingetragen; Klarstellung zu Springborn 2020
- validation.md: Testzähler 170→173 / 11 skips→1 skip korrigiert

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 01:56:16 +02:00
Tarik Moussa
52604d8544 docs: Konzeptdokument Declarative YAML Pipeline (Phase 8e)
doc/concepts/declarative-pipeline.md — vollständige Design-Spezifikation:

  1. Kernidee: Processing Units mit expliziten require/provide-Contracts
  2. Token-Vokabular: 30 Tokens in 7 Kategorien
       input, setup, Gauss-Bonnet, solver, topology, layout, period/domain/output
  3. YAML-Schema: Vollständige Syntax inkl. Parameterdefaults aller Units
  4. Validierungsalgorithmus: monoton wachsendes provided-Set, Pre-Execution-Check
  5. 5 vollständige Beispiele:
       A — Euklidische Uniformisierung Torus (τ-Ausgabe)
       B — Sphärische Uniformisierung (cathead.obj)
       C — Hyperbolische Uniformisierung Torus (Poincaré-Disk)
       D — Volle Pipeline mit Periodenmatrix + 5×5-Kachelung
       E — Absichtlich fehlerhaftes Beispiel mit Validator-Fehlermeldungen
  6. C++-Mapping: alle YAML-Unit-Namen → C++-Funktionen + Header
  7. Implementierungsplan (Phase 8e): pipeline.hpp + CLI-App + YAML-Abhängigkeit
  8. Design-Entscheidungen: YAML vs. JSON/TOML, explizit vs. auto-inference,
     linear vs. DAG, eine Geometrie pro Datei

doc/api/cgal-package.md: Link zum Konzeptdokument ergänzt.
README.md: Link in Dokumentationstabelle ergänzt.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 01:39:14 +02:00
Tarik Moussa
b235666725 docs: Doxygen-API + Validierungsprotokoll + Porting-Tutorial
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Für einen Mathematiker der unabhängig validieren und eigene Forschung
einbringen möchte.

Doxygen-Kommentare (code/include/):
  newton_solver.hpp — newton_euclidean(), newton_spherical(), newton_hyper_ideal()
    je mit \param, \return, \note, \see inkl. mathematischer Begründung
    (Konvexität, Vorzeichenkonvention, SparseQR-Fallback-Erklärung)
  layout.hpp — euclidean_layout(), spherical_layout(), hyper_ideal_layout()
    mit vollständiger Parameter-Doku, halfedge_uv-Semantik, Poincaré-Disk-Note

Neues Dokument:
  doc/math/validation-protocol.md
    7 reproduzierbare Checks mit konkreten Befehlen und erwartetem Output:
    0. 170 Tests, 1 Skip
    1. Gauss–Bonnet exakt (1e-10)
    2. FD-Gradientencheck < 1e-6 für alle 3 Geometrien
    3. Newton-Konvergenz < 50 Iterationen
    4. τ ∈ SL(2,ℤ)-Fundamentaldomäne (3 Invarianten)
    5. Möbius-Arithmetik (Inverse, Compose, from_three)
    6. End-to-End-Pipeline
    7. Manueller τ-Check für torus_4x4.off (Codebeispiel)

Neues Tutorial:
  doc/tutorials/add-inversive-distance.md
    Vollständiger Step-by-Step-Port von Phase 9a (Luo 2004):
    Header anlegen, Energie/Gradient implementieren, FD-Check,
    Newton-Wrapper, CMakeLists, Java-Referenzvergleich, Checkliste.

doc/getting-started.md:
  Abschnitt "Known issues": macOS-Finder-Duplikate (rm-Befehl),
  Warnung "First build 30–90s" (Tarball-Extraktion)

README.md:
  Zwei neue Links in der Dokumentationstabelle (validation-protocol,
  tutorial)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 01:19:44 +02:00
Tarik Moussa
e28aee7051 docs: Mathematiker-Onboarding — Theorie, Validierung, Beispiel-Meshes, 170 Tests
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Ziel: einem interessierten Mathematiker ermöglichen, die bisherige Arbeit
      unabhängig zu validieren und eigene Forschung beizutragen.

Neu:
  doc/math/discrete-conformal-theory.md
      Kompakte mathematische Einführung (DCE, Variationsprinzip, drei
      Geometriemodi, Holonomie, Periodenmatrix) für Riemann-Flächen-Kenner.

  doc/math/validation.md
      Analytisch bekannte Sollwerte + wie man sie mit dem Code prüft:
      Gauss–Bonnet (χ), τ ∈ Fundamentaldomäne (3 Invarianten), Symmetrie-
      Argumente für τ=i (4-fach) und τ=e^{iπ/3} (6-fach), Newton-Konvergenz,
      Gradienten-Check (FD), Holonomie-Kommutator. Reviewer-Checkliste.

  CONTRIBUTING.md (Root)
      Gitea/GitHub-Standard: CONTRIBUTING.md im Root-Verzeichnis als
      Kurzreferenz mit Links zu doc/contributing.md und den Math-Docs.

  code/data/off/torus_4x4.off   — 16 Vertices, 32 Flächen, Genus 1
  code/data/off/torus_8x8.off   — 64 Vertices, 128 Flächen, Genus 1
  code/data/off/torus_hex_6x6.off — 36 Vertices, 72 Flächen, 6-fach Sym.

Aktualisiert:
  README.md              — 158 → 170 Tests, zwei neue Math-Links in Tabelle
  doc/api/tests.md       — 28 Suiten, 170 Tests, 1 Skip (korrigiert)
  doc/contributing.md    — Testzähler 158+2 → 170+1

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 01:11:00 +02:00
Tarik Moussa
66d52fc028 docs: fill information gaps — headers, tests, design decisions, project structure
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doc/api/headers.md              — all 24 public headers with descriptions
doc/api/tests.md                — 26 test suites, individual counts, run instructions
doc/architecture/design-decisions.md  — 5 key design choices with rationale
doc/architecture/project-structure.md — full directory tree + build targets

README + overall_pipeline.md link tables updated.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:40:16 +02:00
Tarik Moussa
95d48c434a chore: .gitignore + vergessene Doc-Dateien nachgetragen
.gitignore: build-Verzeichnisse, .DS_Store, .claude/, CMake-Artefakte
Doc-Dateien die beim Restructure-Commit fehlten:
  doc/api/headers.md             — alle 24 Public-Header mit Beschreibung
  doc/api/tests.md               — 26 Suiten, 158 Tests, Einzelzahlen
  doc/architecture/design-decisions.md — Architekturentscheidungen + Begründung
  doc/architecture/project-structure.md — Verzeichnisbaum + Build-Targets
README.md: Links zu den vier neuen Doc-Dateien ergänzt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:40:05 +02:00
Tarik Moussa
14134b99ce docs: restructure documentation into focused files
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README.md: reduced from 703 to ~75 lines — what/why, status, quick
start, minimal usage example, navigation table to doc/ files.

doc/architecture/overall_pipeline.md: trimmed — roadmap, extension
points, declarative pipeline YAML, and references sections removed
(each now has its own dedicated file). Replaced with a link table.

New files:
  doc/getting-started.md       — build modes, single-test invocation, CLI
  doc/api/pipeline.md          — full pipeline API with code for all 3 geometries
  doc/api/extending.md         — new functionals, geometry modes, Java porting guide
  doc/api/contracts.md         — processing unit preconditions/provides table
  doc/api/cgal-package.md      — Phase 8 CGAL package design + YAML pipeline (TODO)
  doc/math/geometry-modes.md   — Euclidean/Spherical/HyperIdeal comparison
  doc/math/references.md       — all papers by module
  doc/roadmap/phases.md        — Phases 1–10 with porting/research boundary
  doc/roadmap/java-parity.md   — Java vs C++ feature parity table
  doc/contributing.md          — language policy, test standards, release flow

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:17:15 +02:00
Tarik Moussa
f8686a073c docs: add phase roadmap with porting/research boundary to README and architecture doc
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Structured the development roadmap into four blocks with an explicit
boundary marker separating direct Java ports (Phase 1–7) from
infrastructure (Phase 8), remaining porting (Phase 9), and new
research territory (Phase 10+).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 13:18:21 +02:00
Tarik Moussa
a937edcafe docs: Dissertation, GitHub-Repo, Website und LinkedIn von Stefan Sechelmann ergänzt
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README:
- Neuer Einstieg mit vollständiger Dissertation-Referenz (Titel, TU Berlin 2016,
  DOI 10.14279/depositonce-5415, CC BY-SA 4.0)
- Links zu Original-Java-Repo, sechel.de und linkedin.com/in/sechel
- Neuer Abschnitt "Ursprung & Danksagung" vor der Lizenz

doc/architecture/overall_pipeline.md:
- Neuer "Origin"-Abschnitt ganz oben mit vollständiger Quellenangabe
- Literaturabschnitt erweitert: Dissertation als "Primary source" hervorgehoben,
  Java-Original-Repo als direkter Port-Bezug dokumentiert

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 12:33:30 +02:00
Tarik Moussa
9c61c9fc40 docs(architecture): overall_pipeline.md vollständig neu geschrieben
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Ersetzt den generischen Geometry-Framework-Entwurf durch eine präzise
Beschreibung der tatsächlichen konformen Geometrie-Pipeline:

- Klare Positionierung: spezialisiertes Werkzeug für diskrete konforme
  Abbildungen, kein generisches Mesh-Processing-Framework
- Korrigiertes Mermaid-Diagramm: alle 3 Phasen mit realen Komponenten
  (load_mesh → setup_maps → GB-check → Newton → CutGraph → Layout →
   halfedge_uv → Holonomie → Periodenmatrix → Fundamentalbereich → Export)
- Preconditions/Capabilities-Tabelle für alle Processing-Units
- Drei Geometrie-Modi (Euklidisch/Sphärisch/Hyper-ideal) im Vergleich
- MobiusMap, halfedge_uv, Priority-BFS, SL(2,ℤ)-Reduktion dokumentiert
- Realistischer YAML-Pipeline-Entwurf als Phase-8-Ziel (Tokens statt Prosa)
- Erweiterungspunkte: neues Funktional, neue Geometrie, neues Unit
- Alle Literaturverweise direkt auf Implementierungsstellen gemappt
- "Nice To Have but maybe too much" komplett entfernt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 12:19:59 +02:00
user2595
82e1a72bf1 doc/architecture/overall_pipeline.md aktualisiert 2026-03-02 18:11:53 +01:00
user2595
a2e3dae414 doc/architecture/overall_pipeline.md aktualisiert 2026-03-02 15:56:38 +01:00
user2595
439cbfc44c doc/architecture/overall_pipeline.md aktualisiert
Final the first
2026-03-02 14:46:48 +01:00
user2595
3a4fee3f76 doc/architecture/overall_pipeline.md hinzugefügt 2026-02-15 13:54:11 +01:00