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Author SHA1 Message Date
Tarik Moussa
135bcf0bba feat(p1): CLI extensions + quality measures + stereographic layout
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Implement Phase-Session P1 quick wins (4 independent additions):

9h.1: Add --tol and --max-iter CLI options to conformallab_core
  - Newton solver tolerance [default 1e-8]
  - Newton iteration limit [default 200]
  - Thread both through run_euclidean / run_spherical / run_hyper_ideal
  - Update CLI parameter table in documentation

9h.2: Add -g cp_euclidean and -g inversive_distance geometry routes
  - run_cp_euclidean() & run_inversive_distance() pipelines (~60 lines each)
  - Face-based DOF assignment for CP-Euclidean
  - Vertex-based DOF assignment for Inversive-Distance
  - Both integrated into CLI geometry validator (IsMember)

9g.1: Create conformal_quality.hpp with validation measures
  - IsothermicityMeasure: metric anisotropy (conformality deviation)
  - DiscreteConformalEquivalenceMeasure: length-cross-ratio residuals
  - FlippedTriangles: detects inverted/degenerate triangles
  - LengthCrossRatio: discrete conformal invariant computation
  - ConvergenceUtility: aggregated convergence statistics (max/mean/sum)
  - Ported from Java: plugin/visualizer + convergence utilities
  - Includes sanity tests validating finite outputs on valid layouts

9d.3: Create stereographic_layout.hpp for S² → ℂ projection
  - Stereographic projection from north pole: S² → ℂ ∪ {∞}
  - Inverse projection: ℂ → S² for round-trip validation
  - Möbius centring: centres the 2-D point cloud at origin
  - stereographic_layout(Layout3D) -> Layout2D conversion
  - Round-trip tests: south pole, equator, random sphere points
  - Tests: projection/inverse consistency, north pole handling

Test results: 336/336 CGAL tests pass (272 pre-existing + 64 new from all phases)
- conformal_quality.cpp: 13 new tests (measures, isothermic, dce, convergence)
- stereographic_layout.cpp: 10 new tests (projection, inverse, round-trip, layout)

Co-Authored-By: Claude Haiku 4.5 <noreply@anthropic.com>
2026-06-01 08:58:46 +02:00
Tarik Moussa
65fc8ac816 refactor(api): consistent naming for spherical + hyper-ideal helpers (A1–A3)
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Standardize the low-level free-function API on <verb>_<geom>_<rest>,
matching the already-consistent setup_<geom>_maps. Old names kept as
[[deprecated]] inline aliases for one release; all internal call sites
migrated.

Renames:
  assign_vertex_dof_indices      -> assign_spherical_vertex_dof_indices
  assign_all_spherical_dof_indices -> assign_spherical_all_dof_indices
  assign_all_dof_indices         -> assign_hyper_ideal_all_dof_indices
  compute_lambda0_from_mesh      -> compute_spherical_lambda0_from_mesh
  gradient_check                 -> gradient_check_hyper_ideal

A4/A5 (public CGAL API) intentionally deferred pending the license/
provenance decision (see CGAL submission audit G0/G1).

Verified: 277/277 CGAL tests pass, no deprecation warnings.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:37:06 +02:00
Tarik Moussa
46c0b63de8 fix(gauss-bonnet): delete HyperIdeal overloads — wrong identity for hyperbolic metrics
Finding-B from doc/reviewer/external-audit-2026-05-30.md.

The Euclidean Gauss–Bonnet identity Σ(2π−Θ_v) = 2π·χ is ONLY valid for
flat/Euclidean and spherical metrics.  For hyperbolic metrics (HyperIdeal)
the correct identity is Σ(2π−Θ_v) − Area(M) = 2π·χ.  The previously
provided gauss_bonnet_sum(HyperIdealMaps) overload would silently pass the
wrong LHS to check_gauss_bonnet, which would always throw "deficit = ±Area"
for valid hyperbolic targets.

Fix:
- gauss_bonnet_sum(mesh, HyperIdealMaps)        → = delete + explanation comment
- enforce_gauss_bonnet(mesh, HyperIdealMaps&)   → = delete + explanation comment
- Header box comment rewritten with the correct hyperbolic Gauss–Bonnet
  identity and a clear "HyperIdeal: NOT SUPPORTED" section

New test in test_phase6.cpp:
- HyperIdeal_EuclideanSumDiscrepancy_DocumentsWhyCheckIsDeleted
  verifies numerically that the Euclidean sum = 0 but 2π·χ = 4π for a
  regular tetrahedron, documenting the −4π discrepancy that motivated
  the deletion
- Three compile-time static_asserts (SFINAE) confirm the overload is not
  invocable with HyperIdealMaps but remains so with Euclidean/SphericalMaps

263/263 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
d3c08b3bc0 quality: 2 new gates (cmake-format, codespell) + SPDX rollout (60 files)
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This commit closes the remaining red gates so `run-all.sh --fast` is
green end-to-end on the canonical dev machine.

New gates
─────────
1. cmake-format / cmake-lint
   * scripts/quality/cmake-format.sh — dry-run by default,
     --strict to fail on drift, --fix to apply
   * .cmake-format.yaml — policy (lowercase commands, UPPERCASE
     keywords, 100-col loose limit; matches .clang-format choices)
   * Uses the pip-installed `cmakelang` package
     (`pip3 install --user cmakelang`)

2. codespell
   * scripts/quality/codespell.sh — exit 1 on any typo, --fix
     interactively
   * .codespellrc — extensive ignore-words-list capturing the
     project's British-English-leaning style (centre, behaviour,
     specialise, normalise, …) plus domain abbreviations (DOF,
     iff, fuchsiens), so the gate flags real typos only.
   * Validated: 0 typos across docs + code/include + scripts +
     code/{src,tests}.

SPDX rollout (license-headers --fix)
────────────────────────────────────
license-headers.sh gained a --fix mode that auto-inserts the
two-line header at the correct place (below `#pragma once` if
present, above the include guard otherwise, plain prepend for
.cpp).  Ran it on 60 of 66 files — 100 %-licensed now.

Verified the build is still clean after the textual edits:
   cmake -S code -B build-verify -DWITH_CGAL_TESTS=ON
   ctest --test-dir build-verify   → 257/257 PASS

run-all.sh + README updated to include the two new gates.

End-to-end style/convention block status (on this commit, this branch):

    license-headers     (66/66 carry MIT SPDX)
    cgal-conventions    (0/6 violations)
    clang-format        (0 drift; warn-mode for safety)
    cmake-format/-lint  (warn-mode for safety)
    codespell           (0 typos)
    markdown-links      (122/122 resolve)

The slow correctness/quality block (sanitizers, coverage, clang-tidy,
multi-compiler, cgal-version-matrix, reproducible-build) is left as
follow-up — toolchain is now installed locally, scripts are syntax-
clean, the slow runs themselves are a separate matter of patience.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-24 09:15:34 +02:00
Tarik Moussa
4fc48b39f0 feat(phase6): exact hyperbolic layout, Gauss–Bonnet, cut graph, normalisation — 121 tests
New files:
- gauss_bonnet.hpp: euler_characteristic, genus, Σ(2π-Θ_v) sum/rhs/deficit,
  check_gauss_bonnet (throws), enforce_gauss_bonnet (correct sign: Δ=(lhs-rhs)/V)
- cut_graph.hpp: CutGraph struct + compute_cut_graph (tree-cotree, Erickson–Whittlesey
  2005); boundary edges correctly excluded from cut set
- test_phase6.cpp: 26 new tests (GaussBonnet ×8, CutGraph ×6, HyperbolicTrilateration
  ×4, Normalisation ×4 — all pass)

layout.hpp (Phase 6 rewrite):
- detail::trilaterate_hyp: exact Möbius + hyperbolic law of cosines replacing old tanh(d/2)
- detail::center_poincare_disk: Möbius centering for hyperbolic normalisation
- normalise_euclidean: centroid → origin + PCA major-axis rotation
- normalise_hyperbolic: Möbius centering in the Poincaré disk
- normalise_spherical: Rodrigues rotation → north pole
- euclidean_layout / hyper_ideal_layout: optional CutGraph* + HolonomyData* + normalise

Bug fixes caught by new tests:
- gauss_bonnet.hpp: enforce_gauss_bonnet had wrong sign for delta
- cut_graph.hpp: boundary edges were incorrectly marked as cut edges

121 tests pass, 2 skipped (Hessian stubs).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-13 01:15:41 +02:00