267ae965abc3e7c6beb5bed1a6a5d75b992b998c
10 Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
Tarik Moussa
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72503a3518 |
docs(reviewer): anonymise reviewer references; profile-based framing
Replaces the "Springborn / Bobenko alumnus" placeholder in the reviewer materials (briefing, questions, agenda, README) and in locked-vs-flexible.md with a research-profile description: active researcher in the decorated-DCE / Penner-coordinates / canonical-tessellations / hyperideal-polyhedra line, treated as a peer most likely to USE conformallab++ as numerical infrastructure for their own future experiments — not merely to evaluate it. Citations to the published literature (Springborn 2020 paper, etc.) remain untouched. Only personal references to the prospective reviewer were anonymised. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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Tarik Moussa
|
f25174ed69 |
feat: output_uv_map for InversiveDistance, error for CP-Euclidean, reviewer trio
Three reviewer-meeting deliverables in one commit.
(1) output_uv_map for the two remaining DCE entries
─────────────────────────────────────────────────
* Discrete_inversive_distance.h: full implementation. After Newton,
reconstruct effective Euclidean edge lengths from the converged
log-radii via the Bowers-Stephenson identity
`ℓᵢⱼ² = rᵢ² + rⱼ² + 2·Iᵢⱼ·rᵢ·rⱼ`, populate a temporary
EuclideanMaps with `lambda0 = log(ℓᵢⱼ²)`, and reuse the existing
`euclidean_layout(mesh, 0, eucl)` priority-BFS. Per-vertex
Point_2 coordinates written into the user-supplied pmap.
Optional `normalise_layout(true)` applies the canonical PCA
centroid + major-axis rotation, same as the other 3 entries.
* Discrete_circle_packing.h: throws std::runtime_error with a
clear pointer to Phase 9c rather than silently producing
nonsense. CP-Euclidean is face-based; the faithful output is a
per-face circle packing in ℝ², not a per-vertex Point_2 map.
A true layout requires BPS-2010 §6 (~150 lines, on the porting
roadmap as Phase 9c). Failing loudly is the honest default.
Tests: 2 new cases in test_cgal_phase8b_lite.cpp
(OutputUvMap_InversiveDistance_PopulatesPmap;
OutputUvMap_CPEuclidean_ThrowsClearly). Both green.
Suite total now 259 (was 257, +2). CGAL subtotal: 234 → 236.
(2) Reviewer meeting documents
──────────────────────────
New directory doc/reviewer/ with three files:
* briefing.md — one-page orientation for the reviewer.
What the project is, where to look first
(https://tmoussa.codeberg.page/ConformalLabpp/), the headline
evidence (tests/coverage/sanitizers/license), what we want from
them, what's deferred and why, and the 5 questions in a separate
file.
* questions.md — the 5 concrete decisions we want their second
opinion on:
Q1 Phase 9c (port-literal vs re-derive)
Q2 Phase 9b-analytic (worth ~2 weeks for ~6× speedup?)
Q3 CP-Euclidean output_uv_map (build now or defer?)
Q4 CGAL submission strategy (one package or five?)
Q5 geometry-central cross-validation co-authorship
Plus an explicit "what would you say no to?" question at the
bottom — negative feedback is the highest-value information.
* agenda.md — my own internal playbook (NOT to be sent).
60-min flow: 5-min thank-you, 10-min architecture tour,
30-min for Q1-Q5 in the order Q4-Q1-Q2-Q5-Q3, 5-min "no"
question, 5-min wrap-up. Includes post-meeting memo template
to fill out in the 30 min after.
* README.md — index for the directory; says which file goes
to whom and when to send.
(3) locked-vs-flexible.md known-limitations update
─────────────────────────────────────────────
"output_uv_map covers 3 of 5 entries" → "covers 4 of 5".
CP-Euclidean's throws-clearly behaviour documented as a Phase 9c
deliverable rather than a passive gap.
Bonus: extended .codespellrc ignore list (acknowledgement, the
British-English spelling I used in agenda.md).
Verifications on this commit:
259/259 tests pass (0 skipped)
scripts/check-test-counts.sh: OK (23 + 236 = 259)
scripts/quality/license-headers.sh: OK (66/66 SPDX)
python3 scripts/quality/cgal-conventions.py: OK (0/6 violations)
scripts/quality/codespell.sh: OK (0 typos)
scripts/quality/shellcheck.sh: OK (0 findings)
python3 scripts/check-markdown-links.py: OK (143/143)
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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| 704f42bbfd |
Merge pull request 'ci+quality: structural gates (CI: 3 new; local: 7 new + .clang-tidy)' (#18) from ci/structural-tests into main
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Tarik Moussa
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f1d77aa293 |
quality: add code-style + CGAL-convention checkers (local-only)
Closes the gap "no code-quality / convention gate" from the structural
review. Three new artefacts, all local-only (CI promotion deferred
until the existing tree is 100 % clean under each):
1. .clang-format — project's existing style mechanically captured
(4-space indent, opening brace on new line for class/struct/function,
left-aligned pointer/reference modifiers, aligned `using = ...` blocks,
100-col loose limit, no include re-ordering — matches code/include/
today).
2. scripts/quality/clang-format.sh — drift detector. Dry-run mode by
default (always exits 0); --strict to fail on drift; --fix to apply
suggested changes in place. Skips code/deps/ and macOS-duplicate
files.
3. scripts/quality/cgal-conventions.py — checker for the CGAL idioms
that clang-format/clang-tidy cannot express:
CGAL-1 include-guard format `CGAL_<DIRS>_<FILE>_H`
CGAL-2 every public header has a `\\file` Doxygen brief
CGAL-3 no nested namespaces beyond the allowed set
(CGAL::parameters, CGAL::Conformal_map, internal_np, IO)
CGAL-4 named-parameter tag types end in `_t`; value object does not
CGAL-5 no `using namespace ...` at file scope (header leakage)
CGAL-6 no #define beyond CGAL_* / include-guard
Result on the current tree: 6 CGAL public headers, 0 violations.
The checker therefore doubles as documentation of the conventions
we already follow.
Both are wired into scripts/quality/run-all.sh's fast subset (~5 s
combined wall time). README.md updated to split the gates into a
"style/convention" group (cheap, run-on-every-commit material) and a
"correctness/quality" group (slow, run-before-tag material).
The reviewer-facing locked-vs-flexible.md gains another "✅ Closed"
row documenting both gates and the 0-violation baseline.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Tarik Moussa
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a2eee9c279 |
ci+quality: structural gates (CI: 3 new; local: 7 new + .clang-tidy)
CI gates (active on every PR via .gitea/workflows/)
───────────────────────────────────────────────────
1. test-count consistency
cpp-tests.yml gains a step after test-cgal that runs
`scripts/check-test-counts.sh` against the just-built ./build dir
(reuse via new BUILD_DIR env var, ~5 s overhead). Drift between
`doc/api/tests.md` and ctest reality now fails the PR.
2. End-to-end smoke
`scripts/try_it.sh` (the documented user quick-start) is now part of
the CGAL job, so README quick-start regressions fail the PR rather
than silently breaking when users land.
3. Internal markdown link checker
New `.gitea/workflows/markdown-links.yml` + `scripts/check-markdown
-links.py`. PRs that touch any *.md file run the check; main pushes
trigger it too; a weekly cron catches external link rot. Pure
Python, no third-party action. Validated against the current tree:
122 internal links across 37 *.md files, 0 broken.
Local quality scripts (`scripts/quality/`, not in CI)
─────────────────────────────────────────────────────
* `license-headers.sh` — `SPDX-License-Identifier: MIT` audit over
code/{include,src,tests}/. Currently
reports 60/66 files missing it — that's
a follow-up; the script captures the
structural gap.
* `sanitizers.sh` — ASan + UBSan over the fast test suite.
* `coverage.sh` — gcov/lcov line + branch coverage of
code/include/, HTML report under
build-coverage/lcov-html/.
* `clang-tidy.sh` — runs the curated `.clang-tidy` policy over
every public header.
* `multi-compiler.sh` — sequential build + test against every
detected g++/clang++ (auto-discovery or
explicit list).
* `cgal-version-matrix.sh`— sequential build + CGAL test suite against
every CGAL tree under `~/cgal/<ver>/` (or
via `CGAL_ROOTS=...` env var).
* `reproducible-build.sh`— two `Release -j1` builds, fail if any test
executable byte-differs.
* `run-all.sh` — driver: `--fast` for the ~5-min subset,
no arg for the ~25–40 min full sweep;
captures per-gate logs to
build-quality-logs/.
+ `.clang-tidy` — curated, deliberately-small policy (only
checks that fire on OUR code, never on
transitive CGAL/Eigen/Boost headers).
+ `scripts/quality/README.md` — explains the structure, lists each
gate's wall-time + prereqs, and codifies
the promotion path: a gate moves into CI
only when it's green on the dev machine
AND has a recovery-instructions paragraph
in `doc/release-policy.md`.
Doc updates
───────────
`doc/architecture/locked-vs-flexible.md` (reviewer-facing) gains 4
"closed" rows in the limitations table — the 3 CI gates above and the
local quality-script suite.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Tarik Moussa
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e04515c423 |
docs(doxygen): fix critical extraction bug; baseline 24% → 42% on public API
ROOT CAUSE FIX
The Doxyfile EXCLUDE_PATTERNS line contained `*/* 2.hpp` (note the
space — a stray glob from macOS-style "foo 2.hpp" duplicate files).
That pattern was silently matching ALL .hpp / .h files, so Doxygen was
indexing nothing under code/include/. The pre-existing 556 KB of HTML
output was effectively documenting only README.md, CLAUDE.md and a
small stub for std:: — not the C++ API at all.
After fixing the pattern (and properly escaping the space-prefixed
"foo 2.hpp / foo 2.h" macOS-dup patterns), Doxygen now extracts 141
compounds and emits 248 HTML pages from the public headers.
WHAT THIS PR ADDS
1. Doxyfile fix: correct EXCLUDE_PATTERNS; add GENERATE_XML for the
coverage measurement script; add MathJax for `$$...$$` math in
markdown; add the missing CGAL `\cgalParamNBegin/End/Description/
Default/...` aliases so CGAL-style param blocks render correctly.
2. New headers:
- code/include/CGAL/Conformal_map/doxygen_groups.h
defines `PkgConformalMap{,Ref,Concepts,NamedParameters}`,
resolving 17 prior "non-existing group" warnings.
- code/include/CGAL/Conformal_map/doxygen_namespaces.h
gives every namespace under `CGAL::` and `conformallab::` a
brief description.
3. New tool: scripts/doxygen-coverage.sh
Parses the XML output and reports % of public symbols (excluding
the `detail::` implementation namespaces by default) that have a
non-empty brief/detailed description. Supports `--list-undoc`
and `--threshold N` for CI integration.
4. Substantial docstring additions to the public CGAL headers:
`Conformal_map_traits.h`, `Discrete_circle_packing.h`,
`Discrete_inversive_distance.h`, `conformal_mesh.hpp`,
`Discrete_conformal_map.h` (Hyper_ideal_map_result fields).
5. Markdown housekeeping that the strict-warning Doxygen run surfaced:
tests.md (escape literal `#` in table cell),
locked-vs-flexible.md (broken section anchor),
overall_pipeline.md (replace `$$LaTeX$$` with inline-unicode math).
CURRENT NUMBERS
before: ~24% documented (public API; the prior "87%" claim was
based on the broken extraction)
after: 42% documented (165 of 396 public symbols)
warnings: 0 (was 27 spurious + a flood of bogus undocumented
warnings hidden by the buggy EXCLUDE pattern)
NEXT (in a follow-up commit on this branch)
The remaining 231 public symbols (mostly in `layout.hpp`,
`hyper_ideal_functional.hpp`, `spherical_functional.hpp`, the per-mode
functional/Hessian files) can be brought to ~100% with another pass of
short `///` brief descriptions. The coverage script is the gate; CI
can begin enforcing `--threshold 95` once the next pass lands.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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Tarik Moussa
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b0c67af922 |
ci: auto-publish Doxygen HTML to Codeberg Pages on main
New .gitea/workflows/doxygen-pages.yml runs on every push to main that touches the public headers, Doxyfile, the markdown-link filter, any doc/**/*.md, README.md, or the workflow itself. It reuses the existing ci-cpp container image and the existing CODEBERG_TOKEN secret already used by mirror-to-codeberg.yml — no new secret setup needed. The job force-pushes an orphan commit to the `pages` branch on codeberg.org/TMoussa/ConformalLabpp, which Codeberg Pages serves from https://tmoussa.codeberg.page/ConformalLabpp/ (verified live). README.md gains a Doxygen badge and a Documentation table row pointing at the Pages URL. locked-vs-flexible.md (the reviewer-facing doc) is updated to mention the Pages URL next to the Doxygen-coverage gap. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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Tarik Moussa
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ba5c9303a3 |
docs: clean Doxygen warning log (0 warnings) + flag honest gaps to reviewer
Doxygen now builds with **0 warnings** (was 27). Root cause: `[label](doc/api/tests.md)`-style relative markdown links in README.md and CLAUDE.md were being interpreted by Doxygen as \ref commands and failed to resolve (Doxygen indexes .md files by basename, not by repo-relative path). Fix: add a per-file `FILTER_PATTERNS` to Doxyfile that rewrites `[label](path/to/file.md)` into `<a href="path/to/file.md">label</a>` just for Doxygen. HTML anchors bypass \ref resolution entirely; the generated Doxygen HTML still hyperlinks correctly. The on-disk markdown is untouched, so GitHub rendering is unaffected. New file: scripts/doxygen-md-filter.sh (24 lines, documented). Also: append a "Known limitations (state at the time of the reviewer meeting)" table to doc/architecture/locked-vs-flexible.md so the external reviewer sees the 7 deliberate gaps (output_uv_map covers 3 of 5 entries; pipe-only chaining; Phase 9b-analytic derived but not implemented; Doxygen WARN_IF_UNDOCUMENTED policy; CI test-count gate; research-track utilities) with effort estimates next to each. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com> |
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Tarik Moussa
|
039cc26e36 |
Phase 8b-Lite: pipe-operator chaining for named parameters
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Adds `operator|` in `namespace CGAL` so package-local named parameters
can be combined left-to-right without modifying CGAL upstream:
auto p = CGAL::parameters::gradient_tolerance(1e-12)
| CGAL::parameters::max_iterations(500)
| CGAL::parameters::output_uv_map(uv);
CGAL::discrete_conformal_map_euclidean(mesh, p);
Why not the canonical `.a().b().c()` syntax
───────────────────────────────────────────
CGAL's standard chaining mechanism requires registering each named
parameter as a member function on `Named_function_parameters` via the
`CGAL_add_named_parameter` macro in
`CGAL/STL_Extension/internal/parameters_interface.h` — a vendored
upstream file that conformallab++ deliberately treats as read-only.
Adding member-function chainers for our package-local tags would
require either forking CGAL or modifying the vendored copy. Neither
is acceptable for a library that wants to remain portable across
future CGAL releases.
The pipe-operator achieves the same compositional semantics via a
free function in `namespace CGAL` (so ADL finds it for
`Named_function_parameters` operands). Implementation: rebuild the
right-hand-side `Named_function_parameters` with the left-hand-side
as its `Base`, producing an indistinguishable chain that every entry
function accepts unchanged.
Implementation: `code/include/CGAL/Conformal_map/internal/parameters.h`
lines 158-187. The operator is constrained to right-hand-sides with
`No_property` base (i.e. fresh single-parameter packs from the helper
functions), so it never collides with any future CGAL operator on the
same type.
Tests (2 new, total Phase-8b-Lite suite 15 → 17)
────────────────────────────────────────────────
* CGALPhase8bLite.NamedParamPipe_MultipleParamsTakeEffect
Chain three parameters; verify all three take effect (tight
tolerance respected + UV pmap populated + iteration cap honoured).
* CGALPhase8bLite.NamedParamPipe_TwoParams
Chain two parameters; verify max_iterations(0) blocks the loop
even when combined with another param.
Full CGAL suite: 234/234 PASSED, 0 SKIPPED (was 232).
Total: 257/257 PASSED, 0 SKIPPED (was 255).
scripts/check-test-counts.sh: OK.
Documentation updates
─────────────────────
* doc/tutorials/add-output-uv-map.md §3.4: "Current limitation: no
chaining" → "Chaining: use the pipe operator `|`". Explains why
CGAL's `.member()` syntax isn't available and shows the `|`
workaround with a working code example.
* doc/architecture/locked-vs-flexible.md §8: chaining now flagged as
shipped via pipe; recommended posture says `.member()` chaining
only if a user pushes for the CGAL-canonical syntax.
* doc/roadmap/porting-status.md §5: API limitations table updated.
* doc/api/tests.md: CGALPhase8bLite row 15 → 17, total 232 → 234.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Tarik Moussa
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eb393537f3 |
docs: 5-document meeting prep — tutorials + research note + status + architecture
External-reviewer-visit prep package (Springborn-Bobenko PhD alumnus,
2026-05-26). All five documents target the same audience: a
mathematician who wants to evaluate, extend, or contribute to
conformallab++. Goal: make the project maximally hackable BEFORE the
meeting. Code unchanged in this commit — pure documentation.
Files added
───────────
1. **doc/tutorials/block-fd-hessian.md** (460 lines)
Step-by-step tutorial on the per-face block-FD Hessian pattern
shipped in Phase 9b (96× speed-up). Matches the style of
add-inversive-distance.md. Covers:
* The per-face locality lemma (mathematical justification).
* Cost analysis (full-FD vs block-FD vs analytic).
* Implementation walkthrough through face_angles_from_local_dofs +
hyper_ideal_hessian_block_fd.
* Porting checklist for applying the same pattern to a new
functional.
* The four cross-validation criteria.
* When NOT to use block-FD + upgrade path to Phase 9b-analytic.
2. **doc/tutorials/add-output-uv-map.md** (477 lines)
Tutorial for the `output_uv_map` named-parameter pattern shipped in
PR #14. Covers:
* The UX problem (two-step pipeline → one-call wrapper).
* The CGAL named-parameter mechanism + how the entry functions
wire it (get_parameter + constexpr if).
* Step-by-step recipe for adding a new named parameter (worked
example: hypothetical `output_holonomy_map`).
* The five test patterns for verification.
* Why CP-Euclidean (face-DOF) and Inversive-Distance (Luo-edge-length)
do not yet support output_uv_map — what is needed to add them.
3. **doc/math/hyperideal-hessian-derivation.md** (805 lines)
Research-quality LaTeX-formatted derivation of the analytic
HyperIdeal Hessian via the Schläfli identity (Phase 9b-analytic
preparation). Covers:
* Schläfli identity (1858/60) — gradient and second-order form.
* Derivatives of ζ, ζ₁₃, ζ₁₄, ζ₁₅ (all hyper-ideal-to-fully-ideal cases).
* Chain rule for ∂β_i/∂(b,a) and ∂α_ij/∂(b,a) — case-split on the
four α_ij branches.
* Per-face 6×6 block formulas.
* Acceptance criteria for the future implementation.
* Implementation outline (Conformal_map header sketch).
* Appendix A: sign / argument-order pitfalls reading the code.
* References: Schläfli 1858, Milnor 1982, Vinberg 1993, Cho-Kim 1999,
Rivin, Glickenstein 2011, Springborn 2020, BPS 2015.
4. **doc/roadmap/porting-status.md** (~250 lines)
Operational snapshot of "where is each piece of Java math today"
at v0.9.0. Sections:
* 25 000 lines of Java in one table (ported / worth porting /
intentionally skipped breakdown).
* Five DCE models — full status matrix with Java port status,
Hessian type, Newton support, CGAL entry, UV-output capability.
* Topology + solver infrastructure status.
* CGAL public API map + known limitations (no chaining, Surface_mesh
only, submission-readiness gaps).
* Reverse cross-reference: Java class → C++ port location (or
"skipped: replaced by …" / "in roadmap: phase X").
* Things in C++ that the Java original does NOT have (research
extensions track).
* "How to use the library today" quickstart.
5. **doc/architecture/locked-vs-flexible.md** (~270 lines)
12-item architecture-decision review with tier classification
(🔴 load-bearing / 🟡 semi-fixed / 🟢 opportunistic). Each item
includes: locked-since date, cost to change, when to revisit,
recommended posture for new contributors. Key insight stated up
front: "the load-bearing decisions are all good in 2026". Closes
with five open questions for the external reviewer — items where
a second opinion would genuinely help (Phase 9c algorithm choice,
Phase 10a priorities, analytic-Hessian payoff justification,
CGAL upstream vs independent distribution, geometry-central
cross-validation).
Total: ~2 250 lines across five new docs.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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