Commit Graph

17 Commits

Author SHA1 Message Date
Tarik Moussa
a2eee9c279 ci+quality: structural gates (CI: 3 new; local: 7 new + .clang-tidy)
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CI gates (active on every PR via .gitea/workflows/)
───────────────────────────────────────────────────
1. test-count consistency
   cpp-tests.yml gains a step after test-cgal that runs
   `scripts/check-test-counts.sh` against the just-built ./build dir
   (reuse via new BUILD_DIR env var, ~5 s overhead).  Drift between
   `doc/api/tests.md` and ctest reality now fails the PR.

2. End-to-end smoke
   `scripts/try_it.sh` (the documented user quick-start) is now part of
   the CGAL job, so README quick-start regressions fail the PR rather
   than silently breaking when users land.

3. Internal markdown link checker
   New `.gitea/workflows/markdown-links.yml` + `scripts/check-markdown
   -links.py`.  PRs that touch any *.md file run the check; main pushes
   trigger it too; a weekly cron catches external link rot.  Pure
   Python, no third-party action.  Validated against the current tree:
   122 internal links across 37 *.md files, 0 broken.

Local quality scripts (`scripts/quality/`, not in CI)
─────────────────────────────────────────────────────
* `license-headers.sh`   — `SPDX-License-Identifier: MIT` audit over
                            code/{include,src,tests}/.  Currently
                            reports 60/66 files missing it — that's
                            a follow-up; the script captures the
                            structural gap.
* `sanitizers.sh`        — ASan + UBSan over the fast test suite.
* `coverage.sh`          — gcov/lcov line + branch coverage of
                            code/include/, HTML report under
                            build-coverage/lcov-html/.
* `clang-tidy.sh`        — runs the curated `.clang-tidy` policy over
                            every public header.
* `multi-compiler.sh`    — sequential build + test against every
                            detected g++/clang++ (auto-discovery or
                            explicit list).
* `cgal-version-matrix.sh`— sequential build + CGAL test suite against
                            every CGAL tree under `~/cgal/<ver>/` (or
                            via `CGAL_ROOTS=...` env var).
* `reproducible-build.sh`— two `Release -j1` builds, fail if any test
                            executable byte-differs.
* `run-all.sh`           — driver: `--fast` for the ~5-min subset,
                            no arg for the ~25–40 min full sweep;
                            captures per-gate logs to
                            build-quality-logs/.

+ `.clang-tidy`          — curated, deliberately-small policy (only
                            checks that fire on OUR code, never on
                            transitive CGAL/Eigen/Boost headers).

+ `scripts/quality/README.md` — explains the structure, lists each
                            gate's wall-time + prereqs, and codifies
                            the promotion path: a gate moves into CI
                            only when it's green on the dev machine
                            AND has a recovery-instructions paragraph
                            in `doc/release-policy.md`.

Doc updates
───────────
`doc/architecture/locked-vs-flexible.md` (reviewer-facing) gains 4
"closed" rows in the limitations table — the 3 CI gates above and the
local quality-script suite.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-24 08:25:09 +02:00
Tarik Moussa
b0c67af922 ci: auto-publish Doxygen HTML to Codeberg Pages on main
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New .gitea/workflows/doxygen-pages.yml runs on every push to main that
touches the public headers, Doxyfile, the markdown-link filter, any
doc/**/*.md, README.md, or the workflow itself.  It reuses the existing
ci-cpp container image and the existing CODEBERG_TOKEN secret already
used by mirror-to-codeberg.yml — no new secret setup needed.

The job force-pushes an orphan commit to the `pages` branch on
codeberg.org/TMoussa/ConformalLabpp, which Codeberg Pages serves from
https://tmoussa.codeberg.page/ConformalLabpp/ (verified live).

README.md gains a Doxygen badge and a Documentation table row pointing
at the Pages URL.  locked-vs-flexible.md (the reviewer-facing doc) is
updated to mention the Pages URL next to the Doxygen-coverage gap.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-23 23:30:54 +02:00
Tarik Moussa
ba5c9303a3 docs: clean Doxygen warning log (0 warnings) + flag honest gaps to reviewer
Doxygen now builds with **0 warnings** (was 27).

Root cause: `[label](doc/api/tests.md)`-style relative markdown links in
README.md and CLAUDE.md were being interpreted by Doxygen as \ref
commands and failed to resolve (Doxygen indexes .md files by basename,
not by repo-relative path).

Fix: add a per-file `FILTER_PATTERNS` to Doxyfile that rewrites
`[label](path/to/file.md)` into `<a href="path/to/file.md">label</a>`
just for Doxygen.  HTML anchors bypass \ref resolution entirely; the
generated Doxygen HTML still hyperlinks correctly.  The on-disk
markdown is untouched, so GitHub rendering is unaffected.

New file: scripts/doxygen-md-filter.sh (24 lines, documented).

Also: append a "Known limitations (state at the time of the reviewer
meeting)" table to doc/architecture/locked-vs-flexible.md so the
external reviewer sees the 7 deliberate gaps (output_uv_map covers
3 of 5 entries; pipe-only chaining; Phase 9b-analytic derived but not
implemented; Doxygen WARN_IF_UNDOCUMENTED policy; CI test-count gate;
research-track utilities) with effort estimates next to each.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-23 23:19:37 +02:00
Tarik Moussa
039cc26e36 Phase 8b-Lite: pipe-operator chaining for named parameters
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Adds `operator|` in `namespace CGAL` so package-local named parameters
can be combined left-to-right without modifying CGAL upstream:

    auto p = CGAL::parameters::gradient_tolerance(1e-12)
           | CGAL::parameters::max_iterations(500)
           | CGAL::parameters::output_uv_map(uv);
    CGAL::discrete_conformal_map_euclidean(mesh, p);

Why not the canonical `.a().b().c()` syntax
───────────────────────────────────────────
CGAL's standard chaining mechanism requires registering each named
parameter as a member function on `Named_function_parameters` via the
`CGAL_add_named_parameter` macro in
`CGAL/STL_Extension/internal/parameters_interface.h` — a vendored
upstream file that conformallab++ deliberately treats as read-only.

Adding member-function chainers for our package-local tags would
require either forking CGAL or modifying the vendored copy.  Neither
is acceptable for a library that wants to remain portable across
future CGAL releases.

The pipe-operator achieves the same compositional semantics via a
free function in `namespace CGAL` (so ADL finds it for
`Named_function_parameters` operands).  Implementation: rebuild the
right-hand-side `Named_function_parameters` with the left-hand-side
as its `Base`, producing an indistinguishable chain that every entry
function accepts unchanged.

Implementation: `code/include/CGAL/Conformal_map/internal/parameters.h`
lines 158-187.  The operator is constrained to right-hand-sides with
`No_property` base (i.e. fresh single-parameter packs from the helper
functions), so it never collides with any future CGAL operator on the
same type.

Tests (2 new, total Phase-8b-Lite suite 15 → 17)
────────────────────────────────────────────────
* CGALPhase8bLite.NamedParamPipe_MultipleParamsTakeEffect
    Chain three parameters; verify all three take effect (tight
    tolerance respected + UV pmap populated + iteration cap honoured).
* CGALPhase8bLite.NamedParamPipe_TwoParams
    Chain two parameters; verify max_iterations(0) blocks the loop
    even when combined with another param.

Full CGAL suite: 234/234 PASSED, 0 SKIPPED (was 232).
Total: 257/257 PASSED, 0 SKIPPED (was 255).
scripts/check-test-counts.sh: OK.

Documentation updates
─────────────────────
* doc/tutorials/add-output-uv-map.md §3.4: "Current limitation: no
  chaining" → "Chaining: use the pipe operator `|`".  Explains why
  CGAL's `.member()` syntax isn't available and shows the `|`
  workaround with a working code example.
* doc/architecture/locked-vs-flexible.md §8: chaining now flagged as
  shipped via pipe; recommended posture says `.member()` chaining
  only if a user pushes for the CGAL-canonical syntax.
* doc/roadmap/porting-status.md §5: API limitations table updated.
* doc/api/tests.md: CGALPhase8bLite row 15 → 17, total 232 → 234.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-22 13:43:52 +02:00
Tarik Moussa
eb393537f3 docs: 5-document meeting prep — tutorials + research note + status + architecture
External-reviewer-visit prep package (Springborn-Bobenko PhD alumnus,
2026-05-26).  All five documents target the same audience: a
mathematician who wants to evaluate, extend, or contribute to
conformallab++.  Goal: make the project maximally hackable BEFORE the
meeting.  Code unchanged in this commit — pure documentation.

Files added
───────────

1. **doc/tutorials/block-fd-hessian.md** (460 lines)
   Step-by-step tutorial on the per-face block-FD Hessian pattern
   shipped in Phase 9b (96× speed-up).  Matches the style of
   add-inversive-distance.md.  Covers:
   * The per-face locality lemma (mathematical justification).
   * Cost analysis (full-FD vs block-FD vs analytic).
   * Implementation walkthrough through face_angles_from_local_dofs +
     hyper_ideal_hessian_block_fd.
   * Porting checklist for applying the same pattern to a new
     functional.
   * The four cross-validation criteria.
   * When NOT to use block-FD + upgrade path to Phase 9b-analytic.

2. **doc/tutorials/add-output-uv-map.md** (477 lines)
   Tutorial for the `output_uv_map` named-parameter pattern shipped in
   PR #14.  Covers:
   * The UX problem (two-step pipeline → one-call wrapper).
   * The CGAL named-parameter mechanism + how the entry functions
     wire it (get_parameter + constexpr if).
   * Step-by-step recipe for adding a new named parameter (worked
     example: hypothetical `output_holonomy_map`).
   * The five test patterns for verification.
   * Why CP-Euclidean (face-DOF) and Inversive-Distance (Luo-edge-length)
     do not yet support output_uv_map — what is needed to add them.

3. **doc/math/hyperideal-hessian-derivation.md** (805 lines)
   Research-quality LaTeX-formatted derivation of the analytic
   HyperIdeal Hessian via the Schläfli identity (Phase 9b-analytic
   preparation).  Covers:
   * Schläfli identity (1858/60) — gradient and second-order form.
   * Derivatives of ζ, ζ₁₃, ζ₁₄, ζ₁₅ (all hyper-ideal-to-fully-ideal cases).
   * Chain rule for ∂β_i/∂(b,a) and ∂α_ij/∂(b,a) — case-split on the
     four α_ij branches.
   * Per-face 6×6 block formulas.
   * Acceptance criteria for the future implementation.
   * Implementation outline (Conformal_map header sketch).
   * Appendix A: sign / argument-order pitfalls reading the code.
   * References: Schläfli 1858, Milnor 1982, Vinberg 1993, Cho-Kim 1999,
     Rivin, Glickenstein 2011, Springborn 2020, BPS 2015.

4. **doc/roadmap/porting-status.md** (~250 lines)
   Operational snapshot of "where is each piece of Java math today"
   at v0.9.0.  Sections:
   * 25 000 lines of Java in one table (ported / worth porting /
     intentionally skipped breakdown).
   * Five DCE models — full status matrix with Java port status,
     Hessian type, Newton support, CGAL entry, UV-output capability.
   * Topology + solver infrastructure status.
   * CGAL public API map + known limitations (no chaining, Surface_mesh
     only, submission-readiness gaps).
   * Reverse cross-reference: Java class → C++ port location (or
     "skipped: replaced by …" / "in roadmap: phase X").
   * Things in C++ that the Java original does NOT have (research
     extensions track).
   * "How to use the library today" quickstart.

5. **doc/architecture/locked-vs-flexible.md** (~270 lines)
   12-item architecture-decision review with tier classification
   (🔴 load-bearing / 🟡 semi-fixed / 🟢 opportunistic).  Each item
   includes: locked-since date, cost to change, when to revisit,
   recommended posture for new contributors.  Key insight stated up
   front: "the load-bearing decisions are all good in 2026".  Closes
   with five open questions for the external reviewer — items where
   a second opinion would genuinely help (Phase 9c algorithm choice,
   Phase 10a priorities, analytic-Hessian payoff justification,
   CGAL upstream vs independent distribution, geometry-central
   cross-validation).

Total: ~2 250 lines across five new docs.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-22 13:38:53 +02:00
Tarik Moussa
8c01a133d8 Phase 9a: dual circle-packing functionals (CP-Euclidean + Inversive Distance)
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Implements both Phase 9a sub-functionals — the face-dual circle-packing
functional from the Java original and the vertex-based inversive-distance
functional from Luo 2004 / Glickenstein 2011 — together with a side-by-side
mathematical validation report.

CGAL test count: 194 → 205 (+11 from 9a.2, +10 from 9a.1, was already
+1 from 9a.1's setup defaults regression).

Phase 9a.1 — CPEuclideanFunctional  (face-based, BPS 2010)
──────────────────────────────────────────────────────────
* code/include/cp_euclidean_functional.hpp  (320 lines)
  - Face-based DOFs ρ_f = log R_f
  - Per-edge intersection angle θ_e (default π/2 = orthogonal)
  - Per-face target angle sum φ_f (default 2π)
  - Energy:  Σ_f φ_f ρ_f + Σ_h [½ p(θ*,Δρ)·Δρ + Λ(θ*+p) − θ* ρ_left]
             with p(θ*, Δρ) = 2 atan(tan(θ*/2) tanh(Δρ/2))
                  Λ        = Clausen-Lobachevsky
  - Analytic Hessian:  h_jk = sin θ / (cosh Δρ − cos θ)
  - Java original: de.varylab.discreteconformal.functional.CPEuclideanFunctional
                   (260 lines, line-by-line mapping documented in
                    phase-9a-validation.md §1)

* code/tests/cgal/test_cp_euclidean_functional.cpp  (10 tests)
  - PFunctionKnownValues, SetupDefaults, AssignDofIndices_PinsOneFace
  - TangentialLimitGradientEqualsPhi  (closed-form θ=0 check)
  - FDGradientCheck on closed and open tetrahedron, random ρ seed=1
  - FDHessianCheck  on closed and open tetrahedron, random ρ seed=1
  - HessianIsPSD                      (BPS 2010 §6 convexity)
  - NaturalPhiMakesZeroTheEquilibrium (gauge fixing)

Phase 9a.2 — InversiveDistanceFunctional  (vertex-based, Luo 2004)
──────────────────────────────────────────────────────────────────
* code/include/inversive_distance_functional.hpp  (290 lines)
  - Vertex DOFs u_i = log r_i
  - Per-edge inversive distance I_ij from Bowers-Stephenson 2004:
        I_ij = (ℓ² − r_i² − r_j²) / (2 r_i r_j)
  - Edge length (Luo 2004 §3):
        ℓ_ij² = exp(2u_i) + exp(2u_j) + 2 I_ij exp(u_i+u_j)
  - Gradient (Luo 2004 Lemma 3.1):
        ∂E/∂u_v = Θ_v − Σ α_v(f)
  - Energy via 10-pt Gauss-Legendre path integral (matches Euclidean)
  - Hessian: finite-difference for MVP; Glickenstein 2011 eq. 4.6
    analytic form deferred (joins Phase 9b queue)

* code/tests/cgal/test_inversive_distance_functional.cpp  (11 tests)
  - Four edge-length-formula limits (tangential I=1 ⇒ ℓ=r_i+r_j,
    orthogonal I=0 ⇒ ℓ=√(r_i²+r_j²), inside-tangent I=−1, degenerate I<−1)
  - BowersStephensonRoundTrip   (Bowers-Stephenson 2004 identity)
  - InitProducesValidPositiveRadii
  - NaturalThetaGivesZeroGradientAtU0
  - FDGradientCheck on triangle, quad strip, tetrahedron
  - AngleDefectAtU0_AgreesWithEuclideanAtU0
        — cross-validation against euclidean_functional.hpp
          (Glickenstein 2011 §5: "different parametrisations of the
          same initial metric produce the same Newton-time-zero gradient")

Phase 9a Validation Report
──────────────────────────
* doc/architecture/phase-9a-validation.md  (350 lines)
  - Line-by-line mapping CPEuclideanFunctional.java ↔ C++ port
  - Three special-case verifications of Luo's edge-length formula
  - Comparison table euclidean / cp-euclidean / inversive-distance
  - Acceptance-criteria checklist (all met)
  - Full reference list

Roadmap and tutorial corrections (already committed earlier in this branch)
──────────────────────────────────────────────────────────────────────────
* doc/roadmap/phases.md      — Phase 9a split into 9a.1 + 9a.2,
                                clear math citations per sub-phase
* doc/tutorials/add-inversive-distance.md — corrects the prior claim
                                that InversiveDistanceFunctional.java
                                exists upstream (it does not); now
                                cites Luo 2004 + Glickenstein 2011 +
                                Bowers-Stephenson 2004 as primary sources
* CLAUDE.md                  — adds phase-9a-validation.md to doc map

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 21:01:34 +02:00
Tarik Moussa
b02f08625c docs: detaillierter geometry-central Vergleich (Abgrenzung, Adoption, Mehrwert)
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Neues Dokument doc/architecture/geometry-central-comparison.md:
- Gemeinsame mathematische Grundlage (Bobenko–Springborn 2004, Springborn 2020)
- Algorithmenvergleich: Newton (fixed triangulation) vs. Ptolemäische Flips
- Vollständige Feature-Matrix: was existiert wo, was fehlt wo
- Klare Adoptionsempfehlungen: Ptolemäischer Pre-Conditioner ja (GC-2),
  intrinsische Triangulierungen als Architektur nein (Begründung)
- 5 wissenschaftliche Mehrwerte: Kreuz-Validierung, Konvergenzstudie,
  Period-Matrix als Alleinstellungsmerkmal, Sphärische Geometrie, Springborn 2020
- Praktischer Roadmap GC-1 bis GC-paper mit Aufwandsschätzungen
- README-Eintrag ergänzt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 02:06:46 +02:00
Tarik Moussa
66d52fc028 docs: fill information gaps — headers, tests, design decisions, project structure
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doc/api/headers.md              — all 24 public headers with descriptions
doc/api/tests.md                — 26 test suites, individual counts, run instructions
doc/architecture/design-decisions.md  — 5 key design choices with rationale
doc/architecture/project-structure.md — full directory tree + build targets

README + overall_pipeline.md link tables updated.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:40:16 +02:00
Tarik Moussa
95d48c434a chore: .gitignore + vergessene Doc-Dateien nachgetragen
.gitignore: build-Verzeichnisse, .DS_Store, .claude/, CMake-Artefakte
Doc-Dateien die beim Restructure-Commit fehlten:
  doc/api/headers.md             — alle 24 Public-Header mit Beschreibung
  doc/api/tests.md               — 26 Suiten, 158 Tests, Einzelzahlen
  doc/architecture/design-decisions.md — Architekturentscheidungen + Begründung
  doc/architecture/project-structure.md — Verzeichnisbaum + Build-Targets
README.md: Links zu den vier neuen Doc-Dateien ergänzt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:40:05 +02:00
Tarik Moussa
14134b99ce docs: restructure documentation into focused files
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README.md: reduced from 703 to ~75 lines — what/why, status, quick
start, minimal usage example, navigation table to doc/ files.

doc/architecture/overall_pipeline.md: trimmed — roadmap, extension
points, declarative pipeline YAML, and references sections removed
(each now has its own dedicated file). Replaced with a link table.

New files:
  doc/getting-started.md       — build modes, single-test invocation, CLI
  doc/api/pipeline.md          — full pipeline API with code for all 3 geometries
  doc/api/extending.md         — new functionals, geometry modes, Java porting guide
  doc/api/contracts.md         — processing unit preconditions/provides table
  doc/api/cgal-package.md      — Phase 8 CGAL package design + YAML pipeline (TODO)
  doc/math/geometry-modes.md   — Euclidean/Spherical/HyperIdeal comparison
  doc/math/references.md       — all papers by module
  doc/roadmap/phases.md        — Phases 1–10 with porting/research boundary
  doc/roadmap/java-parity.md   — Java vs C++ feature parity table
  doc/contributing.md          — language policy, test standards, release flow

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-17 21:17:15 +02:00
Tarik Moussa
f8686a073c docs: add phase roadmap with porting/research boundary to README and architecture doc
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Structured the development roadmap into four blocks with an explicit
boundary marker separating direct Java ports (Phase 1–7) from
infrastructure (Phase 8), remaining porting (Phase 9), and new
research territory (Phase 10+).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 13:18:21 +02:00
Tarik Moussa
a937edcafe docs: Dissertation, GitHub-Repo, Website und LinkedIn von Stefan Sechelmann ergänzt
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README:
- Neuer Einstieg mit vollständiger Dissertation-Referenz (Titel, TU Berlin 2016,
  DOI 10.14279/depositonce-5415, CC BY-SA 4.0)
- Links zu Original-Java-Repo, sechel.de und linkedin.com/in/sechel
- Neuer Abschnitt "Ursprung & Danksagung" vor der Lizenz

doc/architecture/overall_pipeline.md:
- Neuer "Origin"-Abschnitt ganz oben mit vollständiger Quellenangabe
- Literaturabschnitt erweitert: Dissertation als "Primary source" hervorgehoben,
  Java-Original-Repo als direkter Port-Bezug dokumentiert

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 12:33:30 +02:00
Tarik Moussa
9c61c9fc40 docs(architecture): overall_pipeline.md vollständig neu geschrieben
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Ersetzt den generischen Geometry-Framework-Entwurf durch eine präzise
Beschreibung der tatsächlichen konformen Geometrie-Pipeline:

- Klare Positionierung: spezialisiertes Werkzeug für diskrete konforme
  Abbildungen, kein generisches Mesh-Processing-Framework
- Korrigiertes Mermaid-Diagramm: alle 3 Phasen mit realen Komponenten
  (load_mesh → setup_maps → GB-check → Newton → CutGraph → Layout →
   halfedge_uv → Holonomie → Periodenmatrix → Fundamentalbereich → Export)
- Preconditions/Capabilities-Tabelle für alle Processing-Units
- Drei Geometrie-Modi (Euklidisch/Sphärisch/Hyper-ideal) im Vergleich
- MobiusMap, halfedge_uv, Priority-BFS, SL(2,ℤ)-Reduktion dokumentiert
- Realistischer YAML-Pipeline-Entwurf als Phase-8-Ziel (Tokens statt Prosa)
- Erweiterungspunkte: neues Funktional, neue Geometrie, neues Unit
- Alle Literaturverweise direkt auf Implementierungsstellen gemappt
- "Nice To Have but maybe too much" komplett entfernt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 12:19:59 +02:00
user2595
82e1a72bf1 doc/architecture/overall_pipeline.md aktualisiert 2026-03-02 18:11:53 +01:00
user2595
a2e3dae414 doc/architecture/overall_pipeline.md aktualisiert 2026-03-02 15:56:38 +01:00
user2595
439cbfc44c doc/architecture/overall_pipeline.md aktualisiert
Final the first
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user2595
3a4fee3f76 doc/architecture/overall_pipeline.md hinzugefügt 2026-02-15 13:54:11 +01:00