Commit Graph

16 Commits

Author SHA1 Message Date
Tarik Moussa
bc40a13e8d perf: architecture-touch quick-wins #6 + #10; skip #5 + #7 with honest notes
Evaluated all four mid-tier architecture-touch levers from
doc/architecture/compile-time.md.  Outcome: ship two opt-in
improvements, defer two with explicit rationale.

#6 — Eager-include reduction (Dense → Core)   shipped
─────────────────────────────────────────────────────
Three headers downgraded from `<Eigen/Dense>` to `<Eigen/Core>`:
  * projective_math.hpp
  * hyper_ideal_visualization_utility.hpp
  * mesh_utils.hpp

All three only use Matrix/Vector primitives, no Eigen decompositions.
The other five Dense-including headers were inspected and KEPT on
`<Eigen/Dense>` because they use `.inverse()`, `.determinant()`,
`ColPivHouseholderQR`, or `SelfAdjointEigenSolver`.

Measured Apple M1 cold rebuild after this change: 58 / 60 / 63 s
across three runs.  The prior analysis predicted ~10 % gain; reality
landed within the ±5 s natural variance band of repeated builds, so
the net build-time effect on the test target is "noise-level".

The change is still kept because downstream consumers who include
ONLY one of the three downgraded headers see a real per-TU drop
(Core preprocesses to ~250 k lines vs Dense's ~350 k).

#10 — Fast test-build mode (-O0 -g)   shipped
───────────────────────────────────────────────
New option CONFORMALLAB_FAST_TEST_BUILD (default OFF).  When ON,
both test targets (`conformallab_tests` and `conformallab_cgal_tests`)
compile with `-O0 -g -UNDEBUG`, overriding the inherited Release
`-O3 -DNDEBUG`.

Measured Apple clang: 51.6 s vs 46.8 s without -O0 → slightly slower.
The Backend phase that prior analysis predicted would drop from 9.3 s
to ~2 s doesn't dominate on Apple clang the way it does with GCC;
the bigger `-g` debug info also lengthens the link step.

Kept shipped because:
  * On Linux + g++ (CI runner) the picture flips — Backend dominates
    more, `-O0` typically delivers the predicted ~40 % build-time cut.
  * Cross-platform parity: users on Linux see the same CMake option
    they see locally.

Honest documentation in doc/architecture/compile-time.md notes that
the Apple-clang-local benefit is currently 0 %.  Tests RUN ~15× slower
under `-O0` (1.5 s → 23 s for 236 tests); acceptable for CI "did
anything break" loops, NOT acceptable for benchmark workloads.

#5 — Move detail:: impls to .inl files  ⏸ deferred
───────────────────────────────────────────────────
Pure enabler for #7.  Without #7 landing, the .inl extraction would
just add an extra hop to header reading.  Reconsider once a concrete
maintenance reason emerges (e.g. a downstream user wants to override a
detail helper).

#7 — Pimpl on newton_solver + priority_BFS  ⏸ deferred
───────────────────────────────────────────────────────
Honest assessment: Newton_solver is template-on-Functional, so a
faithful Pimpl would require either type erasure or a virtual-method
interface across the five solver instantiations.  Estimated 1-2 weeks
of refactor with measurable API-surface risk.  PCH already absorbs
the SimplicialLDLT + SparseQR template parse cost, so the remaining
delta is small.  Deferred until a concrete user reports compile-time
pain from these specific templates.

Documentation
─────────────
README.md gains a "Compile-time workflow modes" section with all six
opt-in switches (BUILD_TESTING, HEADERS_CHECK, DEV_BUILD, FAST_TEST_BUILD,
USE_PCH, USE_CCACHE) as ready-to-paste command lines.

doc/architecture/compile-time.md gains:
  * an "Architecture-touch quick-wins" section with the four-row
    status table (5 deferred / 6 shipped / 7 deferred / 10 shipped)
  * the FAST_TEST_BUILD row added to the workflow-modes table
  * the mode-matrix table updated with Linux-vs-macOS expected values
  * an honest "variance" note explaining the ±5 s spread between
    repeated cold builds and why #6's net effect lands in that noise

Verified: default build 55 s (within usual variance), 236/236 tests
pass under default; FAST_TEST_BUILD=ON build 52 s, 236/236 PASS.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-26 11:15:09 +02:00
Tarik Moussa
9ea7d15aa0 perf: add 4 workflow modes (BUILD_TESTING / DEV_BUILD / HEADERS_CHECK / ccache)
Four orthogonal opt-in build modes on top of the existing PCH + Unity
defaults.  Each addresses a specific iteration scenario; defaults are
unchanged (PCH + Unity stays the canonical fast full-rebuild path).

(A) HEADERS_CHECK target — opt-in via -DCONFORMALLAB_HEADERS_CHECK=ON
    Per-public-header smoke-compile sentinels.  For each of the six
    public CGAL umbrella headers, a stub TU `#include <…>\nint main(){}`
    is generated at configure time and compiled in isolation.
      * Full headers_check build:  ≈ 12 s
      * Incremental after touching one header:  ≈ 0.1 s
    Use case: "did my refactor still parse the public API?" without
    waiting 55 s for the full CGAL test build.

(C) DEV_BUILD mode — opt-in via -DCONFORMALLAB_DEV_BUILD=ON
    PCH stays on; Unity Build is forced off (both globally AND on the
    cgal-tests target which previously overrode the global setting).
    Trade-off: full clean rebuild ~75 s (+36 % vs the 55 s default)
    but incremental rebuild after editing a single test file drops
    from ~46 s (unity batch) to ~16 s (single TU + relink).
    Flip on for trial-and-error sessions, flip off before measuring
    CI build time or shipping a PR.

(D) ccache integration — default ON, disable with -DCONFORMALLAB_USE_CCACHE=OFF
    Detects `ccache` on PATH and prepends it to compile + link
    launchers.  On Apple clang + PCH + Unity the macOS-local hit
    rate is currently 0 % (3 separate friction points documented
    in doc/architecture/compile-time.md § "ccache — honesty notes");
    stays neutral when it doesn't help.  Real payoff on Linux CI
    (g++ + traditional PCH) where 80 %+ hit rates are typical.

(BUILD_TESTING=OFF) Standard CMake gate, now respected end-to-end.
    Wrapped both `add_subdirectory(tests)` AND the FetchContent of
    GoogleTest in `if(BUILD_TESTING)`.  Pass `-DBUILD_TESTING=OFF`:
      * Configure ≈ 1 s
      * Build ≈ 0 s
      * 0 object files
      * No GTest fetch
    Use case: IDE-syntax-check workflow that needs
    `compile_commands.json` but does NOT need to download GTest
    or build any test binary.

doc/architecture/compile-time.md gains:
  * a "Workflow modes — what to choose when" section with a 4-row
    switch matrix and a "mode matrix at a glance" comparison table
  * a ccache honesty-notes block listing the three macOS friction
    points (PCH artefact caching, Unity Build path randomisation,
    CMake launcher integration) — Linux CI is where the lever pays
    off

Verified: default build 53 s wall, 236/236 tests pass; all opt-in
modes tested end-to-end with their expected workflow numbers
documented in the doc.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-26 11:15:09 +02:00
Tarik Moussa
1aa3493e7d quality: 4 more gates + dependency audit; full --fast sweep 10/10 green
Some checks failed
C++ Tests / test-fast (pull_request) Successful in 1m57s
API Docs / doc-build (pull_request) Successful in 48s
Markdown link check / check (pull_request) Successful in 51s
C++ Tests / test-cgal (pull_request) Failing after 12m23s
This commit closes the structural-tests work on PR #18.  Every gate
in `run-all.sh --fast` now passes end-to-end on the canonical dev
machine.

New gates
─────────
1. shellcheck (scripts/quality/shellcheck.sh)
   * Scans every `scripts/**/*.sh` at severity=warning+
   * 16 scripts inspected; cleanup pass took the tree from 7 findings
     (SC2164 + SC2034) to 0 findings.

2. cppcheck (scripts/quality/cppcheck.sh)
   * Complementary static analyser to clang-tidy; different heuristics,
     fewer false-positives on heavy CGAL/Eigen templates.
   * Default severity warning+, --strict adds style, --all = everything.
   * Suppresses 4 noise classes (missingIncludeSystem, etc.) explicitly.

3. .editorconfig
   * Cross-IDE fallback for editors that don't honour clang-format.
   * Covers Markdown (preserve trailing whitespace), Python, YAML,
     JSON, shell, Makefile (tabs) — the file types clang-format
     doesn't cover.

4. CONFORMALLAB_WARNINGS_AS_ERRORS CMake option
   * Off by default → regular builds don't break on new GCC warnings.
   * `-DCONFORMALLAB_WARNINGS_AS_ERRORS=ON` adds `-Werror`, intended for
     CI promotion-track and sanitizer runs.

Dependency audit  (doc/architecture/dependencies.md)
────────────────────────────────────────────────────
New single-source-of-truth document listing:
  * what the library requires (Eigen + CGAL + Boost — all header-only)
  * what tests require (auto-fetched GTest, no system install)
  * what each quality tool is for, install command per OS, and
    behaviour when missing (each gate exits 2 = SKIP, run-all
    recognises this and continues)
  * a verification recipe that strips PATH down and shows the
    library still configures + builds + tests cleanly with zero
    quality tools installed.

run-all.sh enhanced
───────────────────
* Recognises "tool not in PATH" → SKIP (not FAIL).
* Summary now reports `passed / skipped / failed` separately.

Bug fixes uncovered by the sweep
────────────────────────────────
* sanitizers.sh: gtest_discover_tests ran the ASan-instrumented
  binary at build time and aborted → added
  `-DCMAKE_GTEST_DISCOVER_TESTS_DISCOVERY_MODE=PRE_TEST` to defer
  discovery to ctest invocation.  Now 23/23 sanitizer-instrumented
  tests pass.

* clang-tidy.sh on macOS: brew-installed clang-tidy couldn't find
  Apple SDK system headers (<cmath>, <complex>, …) → added
  `--extra-arg=-isysroot $(xcrun --show-sdk-path)` on Darwin.

* clang-tidy.sh: needed `-DWITH_CGAL_TESTS=ON` in compile_commands
  generation so CGAL include paths are part of at least one
  compile entry.  Now resolves CGAL/Surface_mesh.h etc.

* clang-tidy.sh: viewer-only headers (`viewer_utils.h`, `mesh_utils.hpp`)
  excluded — they need `WITH_VIEWER=ON` + system GLFW/libigl that the
  lint build doesn't drag in.

* `.codespellrc`: extended ignore list (recognise, signalled, modelled,
  travelled, …) for British-English consistency across own writing.

Final state — local quality block on this commit, this branch:

     License headers       (66/66 carry MIT SPDX)
     CGAL conventions      (0/6 violations on 6 CGAL headers)
     clang-format drift    (0 drift)
     cmake-format/-lint    (0 drift, 0 lint findings)
     codespell             (0 typos in scope)
     shellcheck            (0 findings across 16 .sh files)
     cppcheck              (warning+ severity clean)
     Markdown links        (122/122 resolve)
     Sanitizers (ASan+UBSan) (23/23 fast tests pass)
     clang-tidy             (35 headers inspected, 0 findings)

Library standalone-ness verified:
    env -i PATH=... cmake -S code -B /tmp/build-standalone
    cmake --build /tmp/build-standalone --target conformallab_tests
    ctest -E '^cgal\.'    →  all green

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-24 09:56:40 +02:00
Tarik Moussa
02fb80ee3e Phase 7.5: Doxygen infrastructure + Phase 8 design freeze
Some checks failed
C++ Tests / test-fast (push) Successful in 1m57s
C++ Tests / test-fast (pull_request) Successful in 2m19s
C++ Tests / test-cgal (push) Has been skipped
C++ Tests / test-cgal (pull_request) Failing after 2m26s
Adds the Doxygen documentation pipeline as the bridge from Phase 7
(porting complete) to Phase 8 (CGAL package). Also captures the
strategic Phase 8 decisions taken on 2026-05-19.

Infrastructure
──────────────
* Doxyfile         — CGAL-style minimal configuration, HTML-only,
                     INPUT=code/include + doc/, excludes deps/ and
                     macOS Finder duplicates
* code/CMakeLists  — `doc` target via find_package(Doxygen QUIET);
                     silently disabled if Doxygen is not installed
* README           — `cmake --build build --target doc` instructions
* .gitignore       — exclude doc/doxygen/ output

Phase 8 strategic decisions (recorded in doc/api/cgal-package.md)
────────────────────────────────────────────────────────────────
* Submission to CGAL: pre-submission-ready, 12+ months horizon, MIT preserved
* Mesh-type flexibility: generic FaceGraph + HalfedgeGraph
* Parameter style: CGAL Named Parameters
* Default kernel: Simple_cartesian<double> (status quo)
* Architecture: 3-layer wrapper, no algorithm duplication
* Acceptance test: Phase 9a (Inversive-Distance) as first new client

CLAUDE.md updated with a compact Phase 8 decision table.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 19:56:22 +02:00
Tarik Moussa
c5efc3d3cc chore/docs: Onboarding-Sprint für externe Mathematiker
Some checks failed
C++ Tests / test-fast (push) Successful in 2m16s
C++ Tests / test-cgal (push) Has been skipped
C++ Tests / test-fast (pull_request) Successful in 2m27s
C++ Tests / test-cgal (pull_request) Failing after 2m11s
- LICENSE: Copyright Tarik Moussa <Tarik.moussa95@gmail.com> (war user2595)
- CITATION.cff: maschinenlesbares Zitat mit 3 Primärreferenzen (Sechelmann 2016,
  Springborn 2020, Bobenko–Springborn 2004)
- scripts/try_it.sh: Clone→Build→Test→Beispiel in einem Skript
- doc/math/software-landscape.md: Landkarte aller relevanten Tools,
  Problem-A vs. Problem-B Abgrenzung, vollständige Feature-Matrix
- doc/math/novelty-statement.md: formales Alleinstellungsmerkmal,
  Zielgruppen, was dieses Projekt nicht ist
- code/CMakeLists.txt: cmake --install Target für Header-only-Library
- doc/getting-started.md: Testzähler 158→173, Beispiel-Output, try_it.sh
- README.md: CI/License/DOI-Badges, Cite-Abschnitt, Issue-Tracker-Link,
  Copyright, neue Doku-Einträge software-landscape + novelty-statement

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-18 20:35:46 +02:00
Tarik Moussa
6886803a29 fix(ci): decouple CGAL tests from viewer — add WITH_CGAL_TESTS flag
Some checks failed
C++ Tests / test-fast (push) Successful in 2m12s
Mirror to Codeberg / mirror (push) Failing after 1s
C++ Tests / test-cgal (push) Failing after 1m52s
Root cause: -DWITH_CGAL=ON implied -DWITH_VIEWER=ON, which pulled in
GLFW, which requires wayland-scanner — not present in the headless CI
container (ubuntu:22.04 ARM64).

Fix: new CMake option -DWITH_CGAL_TESTS=ON builds conformallab_cgal_tests
without touching the viewer, GLFW, libigl, or any display dependency.
Only Boost headers are required (already in the Docker image).

Changes
───────
code/CMakeLists.txt
  - Add WITH_CGAL_TESTS option (OFF by default)
  - find_package(Boost REQUIRED) now shared between WITH_CGAL and WITH_CGAL_TESTS
  - WITH_CGAL still implies WITH_VIEWER (for local full builds)
  - Remove duplicate find_package(Boost) inside the WITH_CGAL block

code/tests/CMakeLists.txt
  - cgal/ subdirectory added for WITH_CGAL OR WITH_CGAL_TESTS

.gitea/workflows/cpp-tests.yml
  - test-cgal job: -DWITH_CGAL=ON → -DWITH_CGAL_TESTS=ON

README.md
  - Build modes table: three rows (default / CGAL_TESTS / CGAL full)
  - Quick-start: separate headless and full-local sections
  - Prerequisite table updated

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-14 13:50:56 +02:00
Tarik Moussa
3f124eb071 feat(phase4): HyperIdeal Newton solver, SparseQR fallback, examples, docs
Phase 4 complete — 87 CGAL tests pass, 2 skipped.

Newton solver (phase4a):
- hyper_ideal_hessian.hpp: symmetric FD Hessian (O(ε²), PSD by convexity)
- newton_hyper_ideal(): Newton + backtracking for the HyperIdeal functional
- detail::solve_with_fallback(): optional bool* fallback_used parameter
- solve_linear_system(): public API exposing LDLT→SparseQR fallback

SparseQR fallback tests (SparseQRFallback.*):
- FullRankSystem_CorrectSolution: LDLT path, fallback_used=false
- SingularMatrix_FallbackActivated: zero-pivot → QR activated, fallback_used=true
- Euclidean_ClosedMeshNoPinConverges: gauge-mode null space handled via QR

HyperIdeal Newton tests (NewtonSolver.HyperIdeal_*):
- ConvergesTriangleAllVariable, ResultFieldsConsistent,
  ConvergesTetrahedron, SparseQRFallbackNoCrash
- Natural-target base point (b=1.0, a=0.5) — x=0 is degenerate in log-space

Pipeline tests (test_pipeline.cpp):
- End-to-end: all three geometries, mesh I/O round-trip, solve+export

Example programs (code/examples/):
- example_euclidean.cpp:   headless Euclidean pipeline
- example_hyper_ideal.cpp: headless HyperIdeal pipeline
- example_viewer.cpp:      interactive libigl viewer with jet colour map

README:
- Mathematical scope table: C++ vs Java original (18 rows)
- "For mathematicians" section: mental model, step-by-step new-functional
  guide, half-edge traversal snippets, recommended reading

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-13 00:11:25 +02:00
Tarik Moussa
42dd815591 cmake: add find_package(Boost) for WITH_CGAL mode
Some checks failed
C++ Tests / test (push) Failing after 41s
Mirror to Codeberg / mirror (push) Successful in 35s
CGAL 6.x still unconditionally includes boost/config.hpp in its
config.h, so Boost headers are required even with CGAL_DISABLE_GMP/MPFR.

Use system Boost via find_package instead of the removed 211 MB tarball.
Tests-only mode remains completely dependency-free.

Install: brew install boost  (macOS)
         apt install libboost-dev  (Debian/Ubuntu)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-10 00:20:38 +02:00
Tarik Moussa
cd7b7a8fd8 cmake: add WITH_CGAL / WITH_VIEWER modes, remove unused Boost
Restructures the CMake build into three clearly separated modes:

  (default)        tests only – Eigen + GTest, no heavy deps
  -DWITH_VIEWER=ON builds viewer lib (libigl / GLFW / GLAD)
  -DWITH_CGAL=ON   builds conformallab_core CLI app;
                   implies WITH_VIEWER automatically

Changes:
- code/CMakeLists.txt: viewer and core targets are now guarded by
  option() flags; GTest / tests target is always built
- code/deps/Cmakelists.txt: CGAL, libigl, glfw, glad are only
  extracted when the corresponding mode is enabled; Eigen always
- Remove Boost (211 MB tarball, 0 usages in the codebase – CGAL 6.x
  does not require Boost for Simple_cartesian / Surface_mesh / basic IO)
- Remove code/src/main.cpp (dead file, not referenced in CMake)

All 16 C++ tests pass in tests-only mode (verified locally).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-09 21:42:43 +02:00
Tarik Moussa
c30d540521 add GTest infrastructure and port first mathematical tests from Java
- Add Google Test via CMake FetchContent (v1.14.0)
- Add clausen.hpp: Clausen integral, Lobachevsky function, Im(Li2)
- Add hyper_ideal_utility.hpp: generalized and ideal-vertex hyperbolic
  tetrahedron volume formulas using Eigen for the 4x4 Gram determinant
- Port ClausenTest (5 tests) and HyperIdealUtilityTest (8 tests) from
  Java/JUnit — all 13 pass with same tolerances as the Java originals
- Fix pre-existing VIEWER/viewer case mismatch in CMakeLists.txt

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-09 01:07:19 +02:00
Tarik Moussa
94533514fc fix typo 2026-03-17 21:25:33 +02:00
Tarik Moussa
e150cf6ef3 add new compile target for viewer 2026-03-17 21:18:59 +02:00
Tarik Moussa
1ce993f296 ad simple visualization 2026-03-16 17:20:15 +02:00
Tarik Moussa
e1a90dbd85 fix typo 2026-03-06 21:43:54 +02:00
Tarik Moussa
5be43c90bc add dep liblig 2026-03-04 13:42:26 +02:00
Tarik Moussa
b7875f3b88 add CMake dependency handling for portability 2026-02-14 22:23:21 +02:00