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merge: reconcile data-quality roadmap with audit-remediation main (#12-15)

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Resolved 4 conflicts: cli.py (R-D citing-coverage warning + main's small-corpus JSON/hub-title changes both kept); ingest.py (C-7 paper.id=caller-id pin first, then DQ-2 abstract recovery); test_ingest.py + test_openalex.py (kept both branches' tests).

C-7/DQ-5 overlap (both canonicalise papers.id): kept both layers — openalex._canonical_id normalizes fetch_paper's id (DQ-5); ingest pins papers.id to the caller's bare id (C-7); they converge on the bare canonical id. Fixed the auto-merged test_fetch_paper_success that had contradictory bare/URL assertions. 402 tests pass; ruff + mypy clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Tarik Moussa
2026-06-22 15:11:26 +02:00
parent e817022097 d64edfc324
commit 9e5184385a
29 changed files with 900 additions and 193 deletions
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6
codex/parsing/mathpix.py
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@@ -302,8 +302,10 @@ def extract_formulas(
"""
settings = get_settings()
app_id = mathpix_app_id or settings.mathpix_app_id or ""
app_key = mathpix_app_key or settings.mathpix_app_key or ""
settings_id = settings.mathpix_app_id.get_secret_value() if settings.mathpix_app_id else ""
settings_key = settings.mathpix_app_key.get_secret_value() if settings.mathpix_app_key else ""
app_id = mathpix_app_id or settings_id
app_key = mathpix_app_key or settings_key
if app_id and app_key:
logger.info("Using MathPix backend for %s", pdf_path)