fix(docs): correct provenance CLI command names in README (D-01)
Audit D-01 (2026-06-15): README documented `provenance sync` and `provenance export-bib` but cli.py:161/195 defines `scan` and `bib`. Fix: update both occurrences (prose + CLI reference block). Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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@@ -81,8 +81,8 @@ Maps C++ symbols (qualified names or `file.cpp:line` references) to the
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papers they implement. The workflow:
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papers they implement. The workflow:
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1. Tag C++ source with `@cite <bibkey>` in Doxygen comments.
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1. Tag C++ source with `@cite <bibkey>` in Doxygen comments.
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2. Run `codex provenance sync --lib-path <path>` to scan and resolve tags.
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2. Run `codex provenance scan --lib-path <path>` to scan and resolve tags.
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3. Run `codex provenance export-bib <out.bib>` to generate a `.bib` file
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3. Run `codex provenance bib <out.bib>` to generate a `.bib` file
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containing **only the cited subset** of your collection.
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containing **only the cited subset** of your collection.
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The exported `.bib` is a derived view of the master catalogue — regenerate
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The exported `.bib` is a derived view of the master catalogue — regenerate
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@@ -97,8 +97,8 @@ codex ingest <id> # ingest one paper by arXiv ID or DOI
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codex ingest-file <ids.txt> # bulk ingest from a file of IDs
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codex ingest-file <ids.txt> # bulk ingest from a file of IDs
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codex search "<query>" [--hybrid]
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codex search "<query>" [--hybrid]
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codex discover leads
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codex discover leads
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codex provenance sync --lib-path <path>
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codex provenance scan --lib-path <path>
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codex provenance export-bib <out.bib>
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codex provenance bib <out.bib>
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codex ask "<question>" # optional LLM Q&A via Ollama
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codex ask "<question>" # optional LLM Q&A via Ollama
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```
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```
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