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33fb91d4787e5a547c1ba9c319c342fdb1a5b4bb
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3 Commits

Author SHA1 Message Date
Tarik Moussa
33fb91d478 docs(audit): live-DB verification — confirm C-7 & C-1, refine M-1 
Read-only queries vs the live Jetson corpus (papers=36, citations=811):
- C-7 CONFIRMED: 35/36 papers.id are DOI-URL form (https://doi.org/...),
  incl. arXiv papers as arXiv-DOI URLs. Bare-ID lookups fail for 35/36.
- C-1 CONFIRMED: discover.py mis-flags 13 ingested papers as dangling;
  graph.py correctly resolves 57 cross-cite edges → the two paths diverge.
- M-1 REFINED HIGH→MED: paper_identifiers exists (39 rows), so no live crash;
  structural migration-tooling gap remains.
- C-2 partially refuted: 39 alias rows > 35 → ~4 diverging aliases, not inert.

Adjusted tally: 7 HIGH, 12 MED, 26 LOW.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
 2026-06-15 10:40:46 +02:00
Tarik Moussa
2d1b0b5e23 docs(audit): complete whole-repo audit (parts D-G + exec summary) 
- Part D synthesis: C-11 HIGH (lead-ID collision → silent overwrite), R-8 MED, D-4 LOW.
- Part E wiki-rest: R-9 MED (cross-ref injection corrupts LaTeX math), C-12/C-13/R-10/R-11 LOW.
- Part F embed/quality/models: C-14/R-12 LOW + C-7 corroboration. Cleanest modules.
- Part G cli/config: C-15 MED (embedding_dim vs hardcoded vector(1024)), R-13/S-4/R-14/D-5 LOW.

Executive summary: 45 findings total (8 HIGH, 11 MED, 26 LOW). Five root themes;
dominant one is un-normalized identity (C-1/C-7/C-10/M-1). Whole repo reviewed.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
 2026-06-15 10:14:50 +02:00
Tarik Moussa
7682ff112f docs(audit): whole-repo audit parts A-C (grounding, sources, parsing) 
Closes request (a) — the second pass over loop-1 §8 open items:
- Part A grounding guard: C-4 (HIGH, zero-claim pages bypass quarantine),
  C-5/R-1 MED, C-6/R-2/R-3 LOW.
- Part B sources/: C-7 (HIGH, papers.id stored in OpenAlex URL form vs the
  bare-ID contract), T-3 MED, R-4/R-5/C-9 LOW.
- Part C parsing/: C-10 MED (formulas/figures key on filename not paper.id),
  R-6/R-7 LOW — all latent (live corpus is .txt).

Running tally: 30 findings, 7 HIGH. Common root: un-normalized identity.
Parts D-G (synthesis/wiki/embed/cli) still open.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
 2026-06-15 09:23:56 +02:00