user2595/codex-py
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
88 Commits 5 Branches 0 Tags
45c3b16dd7b08144449a2d06ead5fa197073e473
Commit Graph

4 Commits

Author SHA1 Message Date
Tarik Moussa
92928bab99 feat(cli): graph-report titles + JSON warning; wire recommend/cocited (U-1,U-3,U-4,C-9) 
- U-1: 'graph report' shows the paper title next to each in-KB hub (dangling
  OpenAlex-id hubs are flagged), instead of bare ids.
- U-3: '--json' now includes a 'small_corpus_warning' field (null unless below
  graph_min_corpus_size) instead of silently dropping the warning.
- C-9: new 'codex discover recommend <id>' wires semanticscholar.fetch_recommendations
  (was implemented + tested but unreachable).
- U-4: new 'codex graph cocited <id>' wires graph.find_co_cited (likewise).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
 2026-06-15 21:43:19 +02:00
Tarik Moussa
664600fdc7 fix(graph): resolve cited_id to papers.id via openalex_id JOIN 
build_citation_graph now does:
  SELECT c.citing_id, COALESCE(p.id, c.cited_id) AS cited_id
  FROM citations c
  LEFT JOIN papers p ON p.openalex_id = c.cited_id

Before: cited_id (OpenAlex IDs) never matched papers.id (DOIs) →
  13 cross-citations between ingested papers were invisible in graph.
After: in-KB papers use their canonical DOI key; dangling references
  keep their raw OpenAlex ID unchanged.

Test: test_cross_citation_uses_doi_when_in_kb (42 passed).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-06-15 07:15:21 +02:00
Tarik Moussa
1f1e0e82b3 fix(F-15): address Opus review findings (CRITICAL + WARN) 
CRITICAL:
- cli.py: invert cite-boost formula: divide distance by (1 + alpha*pr)
  instead of multiply — high-PageRank papers now correctly rank higher
- cli.py: wire graph_min_corpus_size config into graph report; warning
  emitted to stderr so JSON stdout stays parseable

WARN:
- graph.py: document that damping is ignored in small-graph uniform branch
- cli.py: sort dangling citations before slicing for stable output
- cli.py: replace raise typer.Exit(0) with return in empty-graph path
- tests: fix *extra_args helper signatures; add cite-boost ordering test
  and small-corpus warning test

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-06-15 03:40:30 +02:00
Tarik Moussa
fd51b70000 feat(F-15): citation graph — PageRank, coupling, co-citation, CLI 
- codex/graph.py: build_citation_graph (DiGraph from DB), citation_pagerank
  (graceful uniform fallback < 5 nodes), find_related (bibliographic coupling),
  find_co_cited, dangling_citations
- codex/config.py: graph_cite_boost_alpha=0.3, graph_min_corpus_size=15
- codex/cli.py: graph report [--top-n] [--json], graph related <paper-id>
  [--min-shared]; search paper --cite-boost (PageRank score weighting)
- tests/graph/: 39 tests (graph functions + CLI) — 326 total green

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-06-15 03:31:36 +02:00