codex-py

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Author	SHA1	Message	Date
Tarik Moussa	92928bab99	feat(cli): graph-report titles + JSON warning; wire recommend/cocited (U-1,U-3,U-4,C-9) - U-1: 'graph report' shows the paper title next to each in-KB hub (dangling OpenAlex-id hubs are flagged), instead of bare ids. - U-3: '--json' now includes a 'small_corpus_warning' field (null unless below graph_min_corpus_size) instead of silently dropping the warning. - C-9: new 'codex discover recommend <id>' wires semanticscholar.fetch_recommendations (was implemented + tested but unreachable). - U-4: new 'codex graph cocited <id>' wires graph.find_co_cited (likewise). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>	2026-06-15 21:43:19 +02:00
Tarik Moussa	1f1e0e82b3	fix(F-15): address Opus review findings (CRITICAL + WARN) CRITICAL: - cli.py: invert cite-boost formula: divide distance by (1 + alphapr) instead of multiply — high-PageRank papers now correctly rank higher - cli.py: wire graph_min_corpus_size config into graph report; warning emitted to stderr so JSON stdout stays parseable WARN: - graph.py: document that damping is ignored in small-graph uniform branch - cli.py: sort dangling citations before slicing for stable output - cli.py: replace raise typer.Exit(0) with return in empty-graph path - tests: fix extra_args helper signatures; add cite-boost ordering test and small-corpus warning test Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-06-15 03:40:30 +02:00
Tarik Moussa	fd51b70000	feat(F-15): citation graph — PageRank, coupling, co-citation, CLI - codex/graph.py: build_citation_graph (DiGraph from DB), citation_pagerank (graceful uniform fallback < 5 nodes), find_related (bibliographic coupling), find_co_cited, dangling_citations - codex/config.py: graph_cite_boost_alpha=0.3, graph_min_corpus_size=15 - codex/cli.py: graph report [--top-n] [--json], graph related <paper-id> [--min-shared]; search paper --cite-boost (PageRank score weighting) - tests/graph/: 39 tests (graph functions + CLI) — 326 total green Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-06-15 03:31:36 +02:00

Author

SHA1

Message

Date

Tarik Moussa

92928bab99

feat(cli): graph-report titles + JSON warning; wire recommend/cocited (U-1,U-3,U-4,C-9)

- U-1: 'graph report' shows the paper title next to each in-KB hub (dangling
  OpenAlex-id hubs are flagged), instead of bare ids.
- U-3: '--json' now includes a 'small_corpus_warning' field (null unless below
  graph_min_corpus_size) instead of silently dropping the warning.
- C-9: new 'codex discover recommend <id>' wires semanticscholar.fetch_recommendations
  (was implemented + tested but unreachable).
- U-4: new 'codex graph cocited <id>' wires graph.find_co_cited (likewise).

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

2026-06-15 21:43:19 +02:00

Tarik Moussa

1f1e0e82b3

fix(F-15): address Opus review findings (CRITICAL + WARN)

CRITICAL:
- cli.py: invert cite-boost formula: divide distance by (1 + alpha*pr)
  instead of multiply — high-PageRank papers now correctly rank higher
- cli.py: wire graph_min_corpus_size config into graph report; warning
  emitted to stderr so JSON stdout stays parseable

WARN:
- graph.py: document that damping is ignored in small-graph uniform branch
- cli.py: sort dangling citations before slicing for stable output
- cli.py: replace raise typer.Exit(0) with return in empty-graph path
- tests: fix *extra_args helper signatures; add cite-boost ordering test
  and small-corpus warning test

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

2026-06-15 03:40:30 +02:00

Tarik Moussa

fd51b70000

feat(F-15): citation graph — PageRank, coupling, co-citation, CLI

- codex/graph.py: build_citation_graph (DiGraph from DB), citation_pagerank
  (graceful uniform fallback < 5 nodes), find_related (bibliographic coupling),
  find_co_cited, dangling_citations
- codex/config.py: graph_cite_boost_alpha=0.3, graph_min_corpus_size=15
- codex/cli.py: graph report [--top-n] [--json], graph related <paper-id>
  [--min-shared]; search paper --cite-boost (PageRank score weighting)
- tests/graph/: 39 tests (graph functions + CLI) — 326 total green

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

2026-06-15 03:31:36 +02:00

3 Commits