Commit Graph

4 Commits

Author SHA1 Message Date
Tarik Moussa
1da81c7b28 feat(tex): section-aware multi-file .tex ingest (R-C)
Flatten multi-file arXiv LaTeX (\input/\include) in arxiv.fetch_source so the full body is assembled rather than just the primary file's include skeleton, and add section-aware chunking (tex.chunk_sections) so .tex chunks never span a \section boundary and are labelled by their real heading. The ingest .tex path now produces (section, chunk) pairs, quality-gated together so labels stay aligned; the stored 'section' column gains genuine signal instead of mostly 'body' (serves DQ-3 fidelity + audit R-12).

Adds scripts/rc_tex_reingest.py to re-ingest arXiv papers from .tex (dry-run by default; replaces chunks). Tests: flatten_inputs, chunk_sections, multi-file fetch_source, section-label ingest, is_arxiv_id. Full suite 365 passed; ruff + mypy clean.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-18 04:15:20 +02:00
Tarik Moussa
1df9be6563 feat(F-09): rich parsing — formula + figure extraction
- codex/parsing/mathpix.py: pix2tex (local, CPU) primary + MathPix API
  optional; bbox heuristic h>15px, math-char-count>5; singleton model cache
- codex/parsing/figures.py: pymupdf embedded-image extraction → PNG;
  caption detection via proximity + "Figure/Fig./Abbildung" prefix
- codex/models.py: FormulaChunk + FigureChunk dataclasses (R-10/R-11)
- codex/ingest.py: --rich flag wires formula+figure extraction post-ingest
- codex/cli.py: search_app sub-typer (paper + formula subcommands),
  --rich flag on ingest; wiki_app from F-12 preserved intact
- codex/config.py: mathpix_app_id/key, pix2tex_fallback, figures_dir
- infra/schema.sql: formulas + figures tables with HNSW pgvector indexes
- pyproject.toml: pymupdf>=1.24, pix2tex>=0.1.4
- tests/parsing/test_mathpix.py + test_figures.py: 31 tests (mock pix2tex
  + MathPix HTTP, real pymupdf on synthetic PDF)

Gate: 158 passed, ruff clean, mypy clean (20 files)
Requirements: R-10 R-11 R-12 R-13 R-14 → done

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-06-14 01:16:24 +02:00
Tarik Moussa
d1ffea1c1c fix(parsing): case-insensitive arXiv idno match; fix tmp_path types; add extract_structure test
Review-Gate finding: GROBID emits type="arXiv" (camel-case), not "arxiv".
XPath literal match silently returned empty strings for all real responses.
Fix: iterate idno elements and compare .lower() == "arxiv".
Test fixture updated to reflect real GROBID output (type="arXiv").

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-06-04 23:47:18 +02:00
Tarik Moussa
c6a428d335 feat(parsing): LaTeX, Nougat, GROBID parsers with chunking
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-06-04 23:30:58 +02:00