- codex/synthesis.py: Lead/Provenance dataclasses, find_connections/gaps/improvements, propose_conjectures (status=unverified, quarantined in leads/conjectures/), write_leads (grounded→leads/grounded/, conjectures→leads/conjectures/ HARD invariant) - codex/cli.py: synthesis leads/conjectures/report command group - codex/config.py: F-13 settings (leads_dir, synthesis_llm_*, synthesis_top_k, synthesis_min_grounded_ratio, synthesis_gap_min_coverage) - tests/synthesis/: 42 tests covering model, grounding, conjecture invariant, quarantine, CLI - spike/: F-13 spike script + output (live run attempted) Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
137 lines
4.7 KiB
Python
137 lines
4.7 KiB
Python
"""Tests for find_gaps — coverage map + code-vs-corpus signals."""
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from __future__ import annotations
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from pathlib import Path
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from typing import Any
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import pytest
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from codex.synthesis import find_gaps
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from tests.synthesis.conftest import StubLLM
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def test_find_gaps_code_cites_missing_bibkey(
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monkeypatch: pytest.MonkeyPatch,
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mock_paper_titles: None,
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mock_settings: Path,
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fixture_chunks: list[dict[str, object]],
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tmp_path: Path,
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) -> None:
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"""A bibkey referenced in code but absent from corpus → direct gap lead."""
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# Build a small C++ source tree with an @cite pointing at a missing bibkey
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src_dir = tmp_path / "src"
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src_dir.mkdir()
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(src_dir / "main.cpp").write_text(
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"// @cite UnknownPaper2099\nvoid foo() {}\n",
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encoding="utf-8",
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)
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# All probes return the fixture chunks (so coverage map yields nothing)
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monkeypatch.setattr(
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"codex.synthesis._retrieve_chunks",
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lambda queries, top_k: [dict(c) for c in fixture_chunks],
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)
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leads = find_gaps(lib_path=str(src_dir), llm=StubLLM(""))
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bibkeys_in_gaps = {p.bibkey for lead in leads for p in lead.provenance}
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# The missing bibkey shows up as a gap
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assert any("UnknownPaper2099" in lead.title for lead in leads)
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assert "UnknownPaper2099" in bibkeys_in_gaps
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def test_find_gaps_code_known_bibkey_not_reported(
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monkeypatch: pytest.MonkeyPatch,
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mock_paper_titles: None,
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mock_settings: Path,
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fixture_chunks: list[dict[str, object]],
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tmp_path: Path,
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) -> None:
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"""A bibkey already in the corpus is NOT flagged by the code-vs-corpus path."""
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src_dir = tmp_path / "src"
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src_dir.mkdir()
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(src_dir / "main.cpp").write_text(
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"// @cite Springborn2008\nvoid foo() {}\n",
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encoding="utf-8",
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)
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monkeypatch.setattr(
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"codex.synthesis._retrieve_chunks",
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lambda queries, top_k: [dict(c) for c in fixture_chunks],
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)
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leads = find_gaps(lib_path=str(src_dir), llm=StubLLM(""))
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# Springborn2008 IS in the corpus → not a gap
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assert not any("Springborn2008" in lead.title for lead in leads)
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def test_find_gaps_missing_lib_path_ok(
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monkeypatch: pytest.MonkeyPatch,
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mock_paper_titles: None,
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mock_settings: Path,
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fixture_chunks: list[dict[str, object]],
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) -> None:
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"""Without lib_path the code-vs-corpus path is skipped (no crash)."""
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monkeypatch.setattr(
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"codex.synthesis._retrieve_chunks",
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lambda queries, top_k: [dict(c) for c in fixture_chunks],
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)
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leads = find_gaps(lib_path=None, llm=StubLLM(""))
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# No crash; result list may be empty depending on coverage map.
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assert isinstance(leads, list)
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def test_find_gaps_coverage_map_low_coverage_triggers_llm(
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monkeypatch: pytest.MonkeyPatch,
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mock_paper_titles: None,
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mock_settings: Path,
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) -> None:
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"""A topic covered by only 1 bibkey (< 2) triggers the LLM gap prompt.
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The grounded body must reference Springborn2008 [...] in a content-5-gram
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that exists in the chunk, otherwise the lead is dropped.
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"""
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sparse_chunks: list[dict[str, Any]] = [
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{
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"id": 10,
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"paper_id": "springborn-2008",
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"ord": 16,
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"content": (
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"For an ideal tetrahedron with dihedral angles the hyperbolic volume is "
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"V = L(gamma1) + L(gamma2) + L(gamma3). "
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"The volume function V0 is strictly concave on the angle domain."
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),
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"bibkey": "Springborn2008",
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},
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]
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monkeypatch.setattr(
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"codex.synthesis._retrieve_chunks",
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lambda queries, top_k: [dict(c) for c in sparse_chunks],
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)
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grounded_body = (
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"Only Springborn2008 covers the volume formula at depth, while comparison "
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"papers are missing.\n"
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"For an ideal tetrahedron with dihedral angles the hyperbolic volume is "
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"V = L(gamma1) + L(gamma2) + L(gamma3). [Springborn2008 #chunk 16]\n"
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)
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leads = find_gaps(llm=StubLLM(grounded_body))
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assert any(lead.kind == "gap" for lead in leads)
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def test_find_gaps_explicit_topics_override_default(
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monkeypatch: pytest.MonkeyPatch,
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mock_paper_titles: None,
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mock_settings: Path,
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) -> None:
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"""Passing topics= explicitly overrides the default (paper titles)."""
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captured_queries: list[list[str]] = []
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def fake_retrieve(queries: list[str], top_k: int) -> list[dict[str, Any]]:
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captured_queries.append(queries)
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return [] # forces direct-gap-no-chunks path
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monkeypatch.setattr("codex.synthesis._retrieve_chunks", fake_retrieve)
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find_gaps(llm=StubLLM(""), topics=["custom topic A", "custom topic B"])
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# Both custom topics should have been probed
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flat = [q for qs in captured_queries for q in qs]
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assert "custom topic A" in flat
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assert "custom topic B" in flat
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