Tarik Moussa 6193f5630d docs: fix two doc/code contradictions (audit D-2, D-4) ...

- D-2 config.py: graph_cite_boost_alpha described the OLD inverted formula
  (score = dense * (1 + alpha*pr)); the code divides distance. Document the
  actual boosted_distance = distance / (1 + alpha*pr).
- D-4 synthesis.py: write_leads claimed an 'append-only' INDEX.md that keeps
  previously-recorded ids; _update_index actually rebuilds from on-disk glob.
  Docstring now matches the implementation.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

2026-06-15 11:13:52 +02:00

..

parsing

fix(F-09): address review-gate findings — resource leak + idempotency

2026-06-14 02:23:21 +02:00

sources

style: ruff format normalization to line-length=100

2026-06-15 08:43:53 +02:00

__init__.py

feat: initial project scaffold

2026-06-04 11:19:10 +02:00

__main__.py

fix(ingest): D-04 bibkey heuristic + D-05a/b/c regression tests + __main__

2026-06-15 03:07:06 +02:00

cli.py

fix(F-15): address Opus review findings (CRITICAL + WARN)

2026-06-15 03:40:30 +02:00

config.py

docs: fix two doc/code contradictions (audit D-2, D-4)

2026-06-15 11:13:52 +02:00

db.py

feat: initial project scaffold

2026-06-04 11:19:10 +02:00

discover.py

fix(discover): resolve cited_id via shared resolver (audit C-1)

2026-06-15 11:12:55 +02:00

embed.py

feat(embed): BGE-M3 dense+sparse via FlagEmbedding (ADR-0002)

2026-06-04 23:48:06 +02:00

graph.py

fix(discover): resolve cited_id via shared resolver (audit C-1)

2026-06-15 11:12:55 +02:00

ingest.py

feat(graph): paper_identifiers table — multi-ID alias support

2026-06-15 07:42:21 +02:00

mcp_server.py

fix(mcp): disable DNS rebinding protection for LAN HTTP transport

2026-06-14 14:55:29 +02:00

models.py

feat(F-09): rich parsing — formula + figure extraction

2026-06-14 01:16:24 +02:00

provenance.py

feat(discover,provenance): graph discovery queries + @cite scan + code_links + bib export

2026-06-05 07:13:01 +02:00

quality.py

feat(F-16): chunk quality gate + section classification

2026-06-15 01:22:44 +00:00

synthesis.py

docs: fix two doc/code contradictions (audit D-2, D-4)

2026-06-15 11:13:52 +02:00

wiki.py

fix(wiki): quarantine zero-citation pages instead of publishing (audit C-4)

2026-06-15 11:06:12 +02:00