Tarik Moussa c7fae5c877 fix(sources): drop no-op try/except + url-encode S2 ids (audit R-4, R-5) ...

- R-4: arxiv.fetch_source had a try/except httpx.RequestError that only re-raised
  — removed (no behaviour change, less noise).
- R-5: semanticscholar URLs now quote(paper_id, safe=':') so a legacy-arXiv '/'
  (arXiv:math/0603097) doesn't corrupt the path and silently return no references.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

2026-06-15 21:39:48 +02:00

..

parsing

feat(config): wrap credentials in SecretStr (audit S-4)

2026-06-15 21:32:13 +02:00

sources

fix(sources): drop no-op try/except + url-encode S2 ids (audit R-4, R-5)

2026-06-15 21:39:48 +02:00

__init__.py

feat: initial project scaffold

2026-06-04 11:19:10 +02:00

__main__.py

fix(ingest): D-04 bibkey heuristic + D-05a/b/c regression tests + __main__

2026-06-15 03:07:06 +02:00

cli.py

feat(config): wrap credentials in SecretStr (audit S-4)

2026-06-15 21:32:13 +02:00

config.py

feat(config): wrap credentials in SecretStr (audit S-4)

2026-06-15 21:32:13 +02:00

db.py

feat(config): wrap credentials in SecretStr (audit S-4)

2026-06-15 21:32:13 +02:00

discover.py

fix(discover): resolve cited_id via shared resolver (audit C-1)

2026-06-15 11:12:55 +02:00

embed.py

feat(embed): BGE-M3 dense+sparse via FlagEmbedding (ADR-0002)

2026-06-04 23:48:06 +02:00

graph.py

fix(discover): resolve cited_id via shared resolver (audit C-1)

2026-06-15 11:12:55 +02:00

ingest.py

fix(ingest): key formulas/figures on papers.id, not filename stem (audit C-10)

2026-06-15 12:09:38 +02:00

mcp_server.py

feat(config): wrap credentials in SecretStr (audit S-4)

2026-06-15 21:32:13 +02:00

models.py

feat(F-09): rich parsing — formula + figure extraction

2026-06-14 01:16:24 +02:00

provenance.py

feat(discover,provenance): graph discovery queries + @cite scan + code_links + bib export

2026-06-05 07:13:01 +02:00

quality.py

feat(F-16): chunk quality gate + section classification

2026-06-15 01:22:44 +00:00

synthesis.py

fix(synthesis): make coverage-map gaps opt-in (audit R-8)

2026-06-15 16:32:01 +02:00

wiki.py

fix(wiki): make grounding tokenizer robust to punctuation (audit R-1)

2026-06-15 16:37:30 +02:00