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9 Commits

Author SHA1 Message Date
Tarik Moussa
56f13d7c4f feat(cgal): propagate Newton status + conditioning diagnostics into CGAL results
Follow-up to S2: surface the new NewtonResult diagnostics through the public
CGAL result types so callers of the high-level API see them too.

- Add `CGAL::Newton_status` (alias of conformallab::NewtonStatus) and three
  fields — `status`, `sparse_qr_fallback_used`, `min_ldlt_pivot` — to
  Conformal_map_result, Hyper_ideal_map_result and Circle_packing_result.
  (sparse_qr_fallback_used already existed on Conformal_map_result but was never
  populated; it is now wired through.)
- Map them from NewtonResult at all five entry points (euclidean / spherical /
  hyper_ideal / inversive_distance / cp_euclidean).
- Test: SingleTriangleConverges now asserts status == Converged and the
  diagnostics propagate.

Additive only — existing `converged`/`iterations`/`gradient_norm` semantics
unchanged. 301/301 CGAL tests pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 19:44:50 +02:00
505dd4b0a5 Merge pull request 'refactor(api): consistent naming for spherical + hyper-ideal helpers (A1–A3)' (#36) from refactor/api-naming-a1-a3 into main
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2026-05-31 17:43:42 +00:00
Tarik Moussa
65fc8ac816 refactor(api): consistent naming for spherical + hyper-ideal helpers (A1–A3)
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Standardize the low-level free-function API on <verb>_<geom>_<rest>,
matching the already-consistent setup_<geom>_maps. Old names kept as
[[deprecated]] inline aliases for one release; all internal call sites
migrated.

Renames:
  assign_vertex_dof_indices      -> assign_spherical_vertex_dof_indices
  assign_all_spherical_dof_indices -> assign_spherical_all_dof_indices
  assign_all_dof_indices         -> assign_hyper_ideal_all_dof_indices
  compute_lambda0_from_mesh      -> compute_spherical_lambda0_from_mesh
  gradient_check                 -> gradient_check_hyper_ideal

A4/A5 (public CGAL API) intentionally deferred pending the license/
provenance decision (see CGAL submission audit G0/G1).

Verified: 277/277 CGAL tests pass, no deprecation warnings.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:37:06 +02:00
Tarik Moussa
d1399ca82f docs: fix stale version, CGAL header, add LOW_MEMORY_BUILD docs (U4+U5+U7+U8)
U4 (README.md:17) — status line: v0.9.0 → v0.10.0, test count 0 → 277

U5 (Discrete_conformal_map.h:6-16) — \file Doxygen block rewritten:
  was: 'provides a single function … Spherical/hyperbolic scheduled for Phase 8b.2'
  now: lists all three discrete_conformal_map_* functions already present,
       plus pointers to the circle-packing companion headers

U7 (getting-started.md) — new 'Mode 4 — Low-memory build' section added
  after Mode 3; shows CONFORMALLAB_LOW_MEMORY_BUILD=ON with -j1 and explains
  the -O0 / no PCH / batch-1 tradeoffs for Raspberry Pi / ≤ 4 GB runners

U8 (README.md compile-time modes) — LOW_MEMORY_BUILD entry added to the
  compile-time workflow code block with a one-line explanation and the
  mandatory -j1 note

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:46:08 +02:00
Tarik Moussa
e04515c423 docs(doxygen): fix critical extraction bug; baseline 24% → 42% on public API
ROOT CAUSE FIX
The Doxyfile EXCLUDE_PATTERNS line contained `*/* 2.hpp` (note the
space — a stray glob from macOS-style "foo 2.hpp" duplicate files).
That pattern was silently matching ALL .hpp / .h files, so Doxygen was
indexing nothing under code/include/.  The pre-existing 556 KB of HTML
output was effectively documenting only README.md, CLAUDE.md and a
small stub for std:: — not the C++ API at all.

After fixing the pattern (and properly escaping the space-prefixed
"foo 2.hpp / foo 2.h" macOS-dup patterns), Doxygen now extracts 141
compounds and emits 248 HTML pages from the public headers.

WHAT THIS PR ADDS
1. Doxyfile fix: correct EXCLUDE_PATTERNS; add GENERATE_XML for the
   coverage measurement script; add MathJax for `$$...$$` math in
   markdown; add the missing CGAL `\cgalParamNBegin/End/Description/
   Default/...` aliases so CGAL-style param blocks render correctly.

2. New headers:
   - code/include/CGAL/Conformal_map/doxygen_groups.h
     defines `PkgConformalMap{,Ref,Concepts,NamedParameters}`,
     resolving 17 prior "non-existing group" warnings.
   - code/include/CGAL/Conformal_map/doxygen_namespaces.h
     gives every namespace under `CGAL::` and `conformallab::` a
     brief description.

3. New tool: scripts/doxygen-coverage.sh
   Parses the XML output and reports % of public symbols (excluding
   the `detail::` implementation namespaces by default) that have a
   non-empty brief/detailed description.  Supports `--list-undoc`
   and `--threshold N` for CI integration.

4. Substantial docstring additions to the public CGAL headers:
   `Conformal_map_traits.h`, `Discrete_circle_packing.h`,
   `Discrete_inversive_distance.h`, `conformal_mesh.hpp`,
   `Discrete_conformal_map.h` (Hyper_ideal_map_result fields).

5. Markdown housekeeping that the strict-warning Doxygen run surfaced:
   tests.md (escape literal `#` in table cell),
   locked-vs-flexible.md (broken section anchor),
   overall_pipeline.md (replace `$$LaTeX$$` with inline-unicode math).

CURRENT NUMBERS

  before:  ~24%  documented (public API; the prior "87%" claim was
                 based on the broken extraction)
  after:    42%  documented   (165 of 396 public symbols)
  warnings: 0   (was 27 spurious + a flood of bogus undocumented
                  warnings hidden by the buggy EXCLUDE pattern)

NEXT (in a follow-up commit on this branch)
The remaining 231 public symbols (mostly in `layout.hpp`,
`hyper_ideal_functional.hpp`, `spherical_functional.hpp`, the per-mode
functional/Hessian files) can be brought to ~100% with another pass of
short `///` brief descriptions.  The coverage script is the gate; CI
can begin enforcing `--threshold 95` once the next pass lands.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-23 23:44:54 +02:00
Tarik Moussa
b7e837815f Phase 8b-Lite extension: output_uv_map named parameter for integrated layout
Closes the UX gap identified in the Phase-8b-Lite design discussion:
the four classical-DCE CGAL entries now optionally run their `*_layout()`
step internally if the caller supplies `CGAL::parameters::output_uv_map(pmap)`.

Before this PR, the workflow was:

    auto res = CGAL::discrete_conformal_map_euclidean(mesh);
    // ... user has to re-set up maps, re-pin vertex, then ...
    auto layout = euclidean_layout(mesh, res.x, maps);
    // ... and copy coordinates into a property map manually.

After this PR:

    auto uv = mesh.add_property_map<Vertex_index, K::Point_2>("uv", ...).first;
    CGAL::discrete_conformal_map_euclidean(
        mesh, CGAL::parameters::output_uv_map(uv));
    // ... uv now populated for every vertex.

Coverage
────────
* `discrete_conformal_map_euclidean`  — `Point_2` per vertex.
* `discrete_conformal_map_spherical`  — `Point_3` per vertex (on S²).
* `discrete_conformal_map_hyper_ideal` — `Point_2` per vertex (Poincaré disk).

CP-Euclidean and Inversive-Distance entries do not yet support
`output_uv_map` — face-based packing has no per-vertex UV concept, and
inversive-distance needs a dedicated layout routine that uses Luo's
edge-length formula (planned follow-up).

New named parameters (`code/include/CGAL/Conformal_map/internal/parameters.h`)
─────────────────────────────────────────────────────────────────────────────
* `output_uv_map(pmap)` — write coordinates into pmap after layout.
* `normalise_layout(bool)` — apply post-layout canonical normalisation
  (PCA centroid for Euclidean, north-pole alignment for Spherical,
  Möbius centring for Hyper-ideal).

Both follow the existing Phase-8a-MVP named-parameter convention.
Chained syntax (`.output_uv_map(...).normalise_layout(true)`) is not
yet supported — pass them one at a time.

Tests (5 new in test_cgal_phase8b_lite.cpp)
───────────────────────────────────────────
* `OutputUvMap_Euclidean_PopulatesPmap`         — UVs are finite + non-trivial.
* `OutputUvMap_Spherical_PopulatesXyz`          — every output on unit S².
* `OutputUvMap_HyperIdeal_PointsInPoincareDisk` — |p|² ≤ 1 if converged.
* `OutputUvMap_Absent_DoesNotRunLayout`         — no parameter ⇒ no layout.
* `OutputUvMap_NormaliseLayout_TakesEffect`     — both raw + norm calls
  return finite UVs (named-parameter chaining limitation documented).

All five pass.  Full CGAL suite: 232/232, 0 skipped (was 227).

doc/api/tests.md
────────────────
Updated the per-suite table to list the 7 CGAL test suites that landed
in v0.9.0 (8a MVP + 9a + 9b + 8b-Lite) but had not yet been added to the
canonical table.  Total: 227 → 232.  This brings the doc back in sync
with `ctest` output and unblocks future `scripts/check-test-counts.sh`
runs.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-22 13:24:37 +02:00
Tarik Moussa
7d10500811 Phase 8b-Lite: CGAL entries for all 5 DCE models + layout wrapper
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Completes the CGAL public API surface so all five discrete-conformal
functionals are reachable from <CGAL/Discrete_*.h>, not only Euclidean.

CGAL test count: 219 → 227 (+8).  Zero skips.

New public headers
──────────────────
* CGAL/Discrete_conformal_map.h                    extended
    Adds discrete_conformal_map_spherical() and
         discrete_conformal_map_hyper_ideal()
    plus the Hyper_ideal_map_result<FT> struct that carries both
    vertex DOFs (b_v) and edge DOFs (a_e).

* CGAL/Discrete_circle_packing.h                   new (180 lines)
    Face-based BPS-2010 circle packing.  Provides
         Default_cp_euclidean_traits<Mesh, K>
         Circle_packing_result<FT>
         discrete_circle_packing_euclidean()

* CGAL/Discrete_inversive_distance.h               new (180 lines)
    Vertex-based Luo-2004 packing.  Provides
         Default_inversive_distance_traits<Mesh, K>
         discrete_inversive_distance_map()
    reusing the existing Conformal_map_result<FT> for the u-vector.

* CGAL/Conformal_layout.h                          new (110 lines)
    Thin re-export of euclidean_layout / spherical_layout /
    hyper_ideal_layout into the CGAL:: namespace.

Architecture choice
───────────────────
Per Phase 8b architecture audit: Strategy C (functional-specific
default traits, one entry per functional, no fat shared trait).
Documented in each header's docblock.  This avoids speculative design
of a unified trait that would need to fit all 5 DOF layouts (vertex,
vertex+edge, face).

Conformal_map_traits.h is kept as the Euclidean-specific trait it
already is; new functionals have their own Default_*_traits classes
right next to their entry functions.

Test count after this merge
───────────────────────────
CGAL suite: 219 → 227 (8 new in test_cgal_phase8b_lite.cpp covering
all four new entries + the Euclidean+layout round-trip).

After-the-merge user contract
─────────────────────────────
A user can now write any of these and get a valid Newton-converged result:

  #include <CGAL/Discrete_conformal_map.h>
  auto r = CGAL::discrete_conformal_map_euclidean(mesh);
  auto r = CGAL::discrete_conformal_map_spherical(mesh);
  auto r = CGAL::discrete_conformal_map_hyper_ideal(mesh);

  #include <CGAL/Discrete_circle_packing.h>
  auto r = CGAL::discrete_circle_packing_euclidean(mesh);

  #include <CGAL/Discrete_inversive_distance.h>
  auto r = CGAL::discrete_inversive_distance_map(mesh);

  #include <CGAL/Conformal_layout.h>
  auto layout = CGAL::euclidean_layout(mesh, r.x, maps);

Not in this PR (intentionally deferred)
───────────────────────────────────────
* 8a.2 — Generic FaceGraph specialisation (still Surface_mesh-only).
* 8c   — User_manual + PackageDescription.txt (CGAL-submission prep).
* 8d   — CGAL-format test directory  (CGAL-submission prep).
* 8e   — YAML pipeline + CLI flag    (orthogonal).
* Named-parameter chaining (`a.b().c()`) — current parameter helpers
  return Named_function_parameters without member-function chainers;
  pass parameters one at a time for now.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-21 21:24:26 +02:00
Tarik Moussa
140f50f707 fixup: deduce kernel from mesh point type instead of hard-coding it
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Removes the only architectural lock-in spotted in the MVP audit before
Phase 9a starts: the wrapper hard-coded Simple_cartesian<double> as the
kernel inside discrete_conformal_map_euclidean.  This would have broken
any Surface_mesh<P> where P came from a different kernel (e.g. EPIC).

Change
──────
* CGAL::Kernel_traits<typename TriangleMesh::Point>::Kernel is now used
  to deduce the kernel from the mesh's point type.
* The full Default_traits<...> instantiation is wrapped in
  internal_np::Lookup_named_param_def so a future `geom_traits(...)`
  named parameter can override the entire traits class without changes
  to the wrapper body (CGAL idiom, used by every CGAL package).
* New test `KernelIsDeducedFromMeshPointType` pins the contract
  explicitly with static_asserts.

Why now
───────
Phase 9a (Inversive-Distance) will copy this same template pattern.
Fixing the kernel deduction once here keeps the design free for any
user kernel; doing it after 9a would mean two parallel hard-coded
kernel sites to refactor.

Tests
─────
CGAL suite: 184/184 passed, 0 skipped  (was 183).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:50:40 +02:00
Tarik Moussa
a1e74c1370 Phase 8a MVP: CGAL traits + Discrete_conformal_map.h Euclidean entry
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First step of the Phase 8 Hybrid MVP. Adds a thin CGAL-conformant public
API layer over the existing implementation, validated by 7 acceptance
tests.  Total CGAL test count: 183 (was 176), 0 skipped.

New public headers
──────────────────
* code/include/CGAL/Conformal_map_traits.h
    - ConformalMapTraits concept documentation
    - Default_conformal_map_traits<Surface_mesh<P>, K> specialisation
    - Static property-map accessors: vertex_points, theta_map,
      vertex_index_map, lambda0_map

* code/include/CGAL/Discrete_conformal_map.h
    - User-facing entry: discrete_conformal_map_euclidean(mesh, np)
    - Conformal_map_result<FT> struct (u, iter, ‖G‖, converged flags)
    - Natural-theta default: x = 0 is the equilibrium when no Θ supplied
    - Honours user-provided Θ via vertex_curvature_map named parameter

* code/include/CGAL/Conformal_map/internal/parameters.h
    - 4 named-parameter tags in CGAL::Conformal_map::internal_np:
        vertex_curvature_map, gradient_tolerance,
        max_iterations,       fixed_vertex_map
    - User-facing helpers in CGAL::parameters::*

Tests (test_cgal_traits_mvp.cpp, 7 cases)
─────────────────────────────────────────
* DefaultTraitsTypes:       compile-time type sanity (static_assert)
* AccessorsReuseExistingMaps: traits accessors return identical pmaps
* SingleTriangleConverges,
  QuadStripConverges:       end-to-end Euclidean wrapper passes
* MaxIterationsTakesEffect: named parameter is read
* GradientToleranceTakesEffect: tolerance override changes Newton end-state
* WrapperMatchesLegacyAPI:  cross-API result equality at 1e-10

Architecture
────────────
3-layer wrapper as designed (doc/api/cgal-package.md):
  Layer 1: code/include/*.hpp           (existing algorithms, unchanged)
  Layer 2: CGAL/Conformal_map/internal/ (adapter, parameter tags)
  Layer 3: CGAL/Conformal_map_traits.h, CGAL/Discrete_conformal_map.h
                                         (user-facing)

No algorithm duplication.  Existing 176 + 36 tests untouched.

Next: Phase 9a (Inversive-Distance) as the second client of this API —
the real acceptance test for the trait design.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-19 22:07:15 +02:00