ROOT CAUSE FIX
The Doxyfile EXCLUDE_PATTERNS line contained `*/* 2.hpp` (note the
space — a stray glob from macOS-style "foo 2.hpp" duplicate files).
That pattern was silently matching ALL .hpp / .h files, so Doxygen was
indexing nothing under code/include/. The pre-existing 556 KB of HTML
output was effectively documenting only README.md, CLAUDE.md and a
small stub for std:: — not the C++ API at all.
After fixing the pattern (and properly escaping the space-prefixed
"foo 2.hpp / foo 2.h" macOS-dup patterns), Doxygen now extracts 141
compounds and emits 248 HTML pages from the public headers.
WHAT THIS PR ADDS
1. Doxyfile fix: correct EXCLUDE_PATTERNS; add GENERATE_XML for the
coverage measurement script; add MathJax for `$$...$$` math in
markdown; add the missing CGAL `\cgalParamNBegin/End/Description/
Default/...` aliases so CGAL-style param blocks render correctly.
2. New headers:
- code/include/CGAL/Conformal_map/doxygen_groups.h
defines `PkgConformalMap{,Ref,Concepts,NamedParameters}`,
resolving 17 prior "non-existing group" warnings.
- code/include/CGAL/Conformal_map/doxygen_namespaces.h
gives every namespace under `CGAL::` and `conformallab::` a
brief description.
3. New tool: scripts/doxygen-coverage.sh
Parses the XML output and reports % of public symbols (excluding
the `detail::` implementation namespaces by default) that have a
non-empty brief/detailed description. Supports `--list-undoc`
and `--threshold N` for CI integration.
4. Substantial docstring additions to the public CGAL headers:
`Conformal_map_traits.h`, `Discrete_circle_packing.h`,
`Discrete_inversive_distance.h`, `conformal_mesh.hpp`,
`Discrete_conformal_map.h` (Hyper_ideal_map_result fields).
5. Markdown housekeeping that the strict-warning Doxygen run surfaced:
tests.md (escape literal `#` in table cell),
locked-vs-flexible.md (broken section anchor),
overall_pipeline.md (replace `$$LaTeX$$` with inline-unicode math).
CURRENT NUMBERS
before: ~24% documented (public API; the prior "87%" claim was
based on the broken extraction)
after: 42% documented (165 of 396 public symbols)
warnings: 0 (was 27 spurious + a flood of bogus undocumented
warnings hidden by the buggy EXCLUDE pattern)
NEXT (in a follow-up commit on this branch)
The remaining 231 public symbols (mostly in `layout.hpp`,
`hyper_ideal_functional.hpp`, `spherical_functional.hpp`, the per-mode
functional/Hessian files) can be brought to ~100% with another pass of
short `///` brief descriptions. The coverage script is the gate; CI
can begin enforcing `--threshold 95` once the next pass lands.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
5.8 KiB
5.8 KiB
Test Suites
conformallab_tests — always built (no CGAL)
Pure-math tests, only Eigen required. Covers Java utilities ported in Phase 1–2.
| File | What it tests |
|---|---|
test_clausen.cpp |
Clausen Cl₂, Lobachevsky Л, ImLi₂ — values at known points |
test_hyper_ideal_utility.cpp |
Tetrahedron volumes (Meyerhoff / Kolpakov–Mednykh) |
test_matrix_utility.cpp |
Matrix helpers |
test_surface_curve_utility.cpp |
Surface curve utilities |
test_discrete_elliptic_utility.cpp |
Discrete elliptic functions |
test_p2_utility.cpp |
P2 projective utilities |
test_hyper_ideal_visualization_utility.cpp |
Poincaré disk projection, circumcircle |
Total: 23 tests, 0 skipped.
conformallab_cgal_tests — built with -DWITH_CGAL_TESTS=ON or -DWITH_CGAL=ON
All tests have CTest prefix cgal. (set via TEST_PREFIX "cgal." in CMakeLists).
| Suite | File | Tests | What is verified |
|---|---|---|---|
ConformalMeshTopology |
test_conformal_mesh.cpp |
4 | Euler characteristic, vertex/edge/face counts |
ConformalMeshTraversal |
test_conformal_mesh.cpp |
4 | Halfedge iteration, valence, opposite |
ConformalMeshProperties |
test_conformal_mesh.cpp |
5 | Property maps (λ, θ, idx, α, geometry type) |
ConformalMeshValidity |
test_conformal_mesh.cpp |
1 | CGAL validity for all factory meshes |
HyperIdealFunctional |
test_hyper_ideal_functional.cpp |
7 | FD gradient checks + Hessian symmetry |
SphericalFunctional |
test_spherical_functional.cpp |
12 | Angle formula + gradient + gauge-fix + cross-module Hessian check |
EuclideanFunctional |
test_euclidean_functional.cpp |
12 | Angle formula + gradient + cross-module Hessian check |
EuclideanHessian |
test_euclidean_hessian.cpp |
9 | Cotangent Laplacian structure, FD agreement, PSD, null space |
SphericalHessian |
test_spherical_hessian.cpp |
8 | Derivative correctness, NSD at equilibrium |
NewtonSolver |
test_newton_solver.cpp |
11 | Convergence: Euclidean ×3, Spherical ×4, HyperIdeal ×4 |
SparseQRFallback |
test_newton_solver.cpp |
3 | Full-rank LDLT · singular matrix → QR · closed mesh gauge mode |
MeshIO |
test_mesh_io.cpp |
6 | OFF/OBJ round-trips, error handling |
Pipeline |
test_pipeline.cpp |
5 | End-to-end: build → setup → solve → export → reload |
Layout |
test_layout.cpp |
6 | Edge-length preservation (Eucl./Spher.), Poincaré disk layout |
Serialization |
test_layout.cpp |
2 | JSON and XML round-trips (DOF vector + layout UVs) |
GaussBonnet |
test_phase6.cpp |
12 | χ, genus, sum/RHS, deficit, check, enforce |
CutGraph |
test_phase6.cpp |
6 | Tree-cotree, open/closed meshes, flag–index consistency |
HyperbolicTrilateration |
test_phase6.cpp |
4 | Möbius + law of cosines: exact distances, disk interior, off-origin |
Normalisation |
test_phase6.cpp |
4 | Euclidean centroid, length ratios, Möbius centring |
MobiusMap |
test_phase7.cpp |
8 | Identity, inverse, compose, from_three, apply(Vector2d) |
BestRootFace |
test_phase7.cpp |
2 | Valid root face selection, interior bonus |
HalfedgeUV |
test_phase7.cpp |
4 | Size = number of half-edges, seam consistency, boundary half-edges = 0 |
PriorityBFS |
test_phase7.cpp |
3 | Success, no seam on open meshes, all vertices placed |
NormaliseEuclidean |
test_phase7.cpp |
2 | UV centroid = 0, halfedge_uv centroid = 0 |
PeriodMatrix |
test_phase7.cpp |
7 | τ ∈ ℍ, SL(2,ℤ) reduction, exception outside ℍ |
FundamentalDomain |
test_phase7.cpp |
7 | Genus-1 parallelogram CCW, generators, g > 1 empty |
TilingCopy/Neighbourhood |
test_phase7.cpp |
4 | Translation correct, tile count |
CuttingUtility |
test_geometry_utils.cpp |
3 | point_in_triangle_2d: false, true, unit triangle (Java CuttingUtilityTest) |
UnwrapUtility |
test_geometry_utils.cpp |
2 | Corner angle: collinear → π, equilateral → π/3 (Java UnwrapUtilityTest) |
ConvergenceUtility |
test_geometry_utils.cpp |
6 | Circumradius + scale-invariant R_f/√A (Java ConvergenceUtilityTests) |
EuclideanLayout |
test_geometry_utils.cpp |
2 | Euclidean layout round-trip edge lengths |
SphericalLayout |
test_geometry_utils.cpp |
1 | Spherical layout on unit sphere |
HomologyGenerators |
test_geometry_utils.cpp |
1 | Genus-2 cut graph: χ = −2, 4 cut edges (brezel2.obj) |
SmokeEuclidean |
test_scalability_smoke.cpp |
3 | Smoke tests on real meshes: CatHead (open), Brezel genus-1, Brezel2 genus-2 |
CGALConformalTraits |
test_cgal_traits_mvp.cpp |
2 | Phase 8a MVP traits + Default model |
CGALDiscreteConformalMap |
test_cgal_traits_mvp.cpp |
6 | Phase 8a MVP wrapper smoke tests |
CPEuclideanFunctional |
test_cp_euclidean_functional.cpp |
10 | Phase 9a.1 — BPS-2010 face-based packing (Java parity) |
InversiveDistanceFunctional |
test_inversive_distance_functional.cpp |
11 | Phase 9a.2 — Luo-2004 vertex-based packing (from literature) |
HyperIdealHessian |
test_hyper_ideal_hessian.cpp |
7 | Phase 9b — block-FD vs full-FD cross-validation + PSD + speed-up |
NewtonPhase9a |
test_newton_phase9a.cpp |
7 | Phase 9a-Newton — convergence for the two new circle-packing solvers |
CGALPhase8bLite |
test_cgal_phase8b_lite.cpp |
15 | Phase 8b-Lite — CGAL entries for all 5 DCE models + output_uv_map + pipe-operator chaining |
Total: 234 tests, 0 skipped.
Running tests
# All CGAL tests
ctest --test-dir build -R "^cgal\." --output-on-failure
# One suite
./build/conformallab_cgal_tests --gtest_filter="PeriodMatrix*"
# One specific test
./build/conformallab_cgal_tests --gtest_filter="PeriodMatrix.TauInUpperHalfPlane"
# Verbose output with timing
./build/conformallab_cgal_tests --gtest_filter="NewtonSolver*" --gtest_print_time=1