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219 Commits

Author SHA1 Message Date
99a82d36ee Merge pull request 'docs(reviewer): aggregate all audits into the index + record decisions' (#37) from docs/reviewer-index-update into main
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2026-05-31 08:46:39 +00:00
Tarik Moussa
b274591aa8 docs(reviewer): aggregate all 12 audits into the index + record decisions
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Adds a comprehensive 'External audit documents' section to the reviewer index:
- groups all 12 audits (correctness, API/perf/packaging, robustness)
- surfaces G0 (porting rights) as the cross-cutting release blocker
- records the decisions taken: coverage gate 80/70/90, API naming A1-A5
  (A1-A3 implemented in PR #36, A4-A5 deferred pending G0/G1)
- points a new session at the low-risk quick-win findings

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:46:05 +02:00
dc978cf5d3 Merge pull request 'review: usability audit v0.10.0 — all 11 findings resolved' (#34) from review/usability-audit-2026-05-31 into main
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2026-05-31 08:32:21 +00:00
e13e7ea8e7 Merge pull request 'docs(reviewer): add 7 external audit documents (test/error, API/perf, CGAL, numerical, input, thread-safety, dependency, math/citation)' (#35) from audits-2026-05-31 into main
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2026-05-31 08:21:54 +00:00
Tarik Moussa
b213ad2265 docs(reviewer): add math-derivation & citation audit
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Checks code/docs against the published mathematics (vs java-port-audit which
checks code vs Java):
- M1: Kolpakov-Mednykh volume formula used in code but missing from references.md
- M2: BPS circle-packing paper cited as '2010' in code vs '2015' in references.md
- M3: post-2023/preprint citations back unimplemented phases — re-verify + clarify
  scope before submission
- M4: no canonical citation-key convention
- M5: large derivations numerically validated but prose unreviewed — expert sign-off

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:21:24 +02:00
Tarik Moussa
bad3c4a9ab docs(reviewer): add 4 gap audits — numerical, input-validation, thread-safety, dependency/license
Closes the dimensions the prior audits did not cover:

- numerical-stability: tolerance hierarchy (FD-step vs Newton tol), discontinuous
  clamps, cancellation in cotangent/area, magic constants.
- input-validation: malformed JSON/XML deserialization, NaN/Inf vertex coords on
  load, schema-drift handling.
- thread-safety: no mutable static state (good); undocumented same-mesh concurrency
  contract; Eigen threading.
- dependency-license: existing THIRD-PARTY-LICENSES matrix is sound but predicated
  on the MIT premise that G0 undermines; test meshes have no provenance/license.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:21:24 +02:00
Tarik Moussa
7902ae8e2c docs(reviewer): add external audits — test/error-handling, API/perf, CGAL readiness
Three complementary, self-contained audit documents (each actionable by a
fresh session, with file:line, code snippets, fixes, acceptance criteria):

- test-coverage-error-handling-audit: coverage gaps + error-handling robustness;
  agreed gate 80% line / 70% branch / 90% function.
- api-performance-audit: API-naming consistency (A1–A5, decided) + Newton-solver
  performance (B1 block-FD, redundant gradient evals, factorization reuse).
- cgal-submission-readiness-audit: G0 porting-rights blocker (original is
  unlicensed Varylab/TU-Berlin code; this is a derivative work — clarify with
  authors before any license/release), G1 license, layout, concept, manual, tests.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-31 10:21:24 +02:00
Tarik Moussa
d5a4d0e8ff ci: add memory limits to all containers — Pi protection
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Every container now has an explicit --memory limit so the OOM killer
has clean boundaries to work with instead of letting any single job
consume all available RAM:

  test-fast:      800m  (build Eigen+GTest, run 26 tests)
  test-cgal:     2000m  (LOW_MEMORY_BUILD, was already set)
  quality-gates:  600m  (apt install + 4 script checks)
  doc-build:      800m  (Doxygen HTML generation)
  markdown-links: 400m  (pure Python, very lightweight)

memory-swap = 1.5× memory in each case (150% total) so the OOM
killer fires cleanly without exhausting the SD card.

⚠  This is workflow-side protection only.  The runner-side fix
   (capacity: 1 in act-runner config) prevents parallel containers
   entirely and is the more reliable protection — see CLAUDE.md.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 07:59:33 +02:00
Tarik Moussa
d4ea5fdd2e ci: remove /ci-all — Pi cannot sustain parallel Docker containers
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The Pi runner (3-4 GB RAM, swap heavily loaded) OOMs when /ci-all
triggers test-cgal + quality-gates + doc-build + links simultaneously:
four Docker containers start at once after test-fast completes, each
consuming 150-400 MB, exhausting available RAM.

Fix: /ci-all removed from all three workflow files.  Each keyword
now triggers exactly one job — no parallel container competition.

Safe workflow: one keyword per commit.
  Typical sequence:
    git commit -m 'fix: ... /test-cgal'   → CGAL tests (~5 min)
    git commit -m 'chore: /quality-gates' → style checks (~30 s)

CLAUDE.md: CI table updated with Pi-runner warning note.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 02:00:39 +02:00
Tarik Moussa
a7b966c850 ci: trigger full pipeline /ci-all
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2026-05-31 01:53:03 +02:00
Tarik Moussa
37b538aae4 docs: Layout2D index semantics, CLI table, CLI roadmap (U9+U10+U11)
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U9 (layout.hpp + example_layout.cpp)
  Layout2D.uv and .halfedge_uv now have explicit Doxygen docs stating:
    - indexing: v.idx() / h.idx() (raw integer index)
    - length: mesh.number_of_vertices() / number_of_halfedges()
    - precondition: no vertex removal / collect_garbage() after loading
    - access pattern example in the doc comment
  example_layout.cpp: access site comment + static_cast<size_t>(v.idx())

U10 (getting-started.md)
  New 'CLI parameter reference' table (7 rows) added directly below the
  CLI usage examples; cross-references --help as the canonical source

U11 (doc/roadmap/phases.md)
  New Phase 9h 'CLI usability extensions' section inserted before Phase 10:
    9h.1  --tol / --max-iter solver-tuning params  (~30 min, no deps)
    9h.2  -g cp_euclidean / -g inversive_distance  (~2-4 h, needs 9a )
  Each sub-task has effort estimate, implementation sketch, and
  acceptance criteria so a future session can pick it up cold.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:51:04 +02:00
Tarik Moussa
ccbfd852b2 docs(examples): use gauge-vertex overload everywhere (U6)
Finding-U6 from doc/reviewer/usability-audit-2026-05-31.md.

The Finding-D fix (external-audit-2026-05-30) added a clean one-call
gauge-vertex overload:
  assign_euclidean_vertex_dof_indices(mesh, maps, gauge_vertex)

But all user-facing code still showed the old verbose manual loop:
  auto vit = mesh.vertices().begin();
  maps.v_idx[*vit++] = -1;
  int idx = 0;
  for (; vit != mesh.vertices().end(); ++vit) maps.v_idx[*vit] = idx++;

Replaced in three places:
  README.md 'Minimal usage' code block
  example_euclidean.cpp Step 3
  example_layout.cpp  pin_first() helper

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:49:05 +02:00
Tarik Moussa
d1399ca82f docs: fix stale version, CGAL header, add LOW_MEMORY_BUILD docs (U4+U5+U7+U8)
U4 (README.md:17) — status line: v0.9.0 → v0.10.0, test count 0 → 277

U5 (Discrete_conformal_map.h:6-16) — \file Doxygen block rewritten:
  was: 'provides a single function … Spherical/hyperbolic scheduled for Phase 8b.2'
  now: lists all three discrete_conformal_map_* functions already present,
       plus pointers to the circle-packing companion headers

U7 (getting-started.md) — new 'Mode 4 — Low-memory build' section added
  after Mode 3; shows CONFORMALLAB_LOW_MEMORY_BUILD=ON with -j1 and explains
  the -O0 / no PCH / batch-1 tradeoffs for Raspberry Pi / ≤ 4 GB runners

U8 (README.md compile-time modes) — LOW_MEMORY_BUILD entry added to the
  compile-time workflow code block with a one-line explanation and the
  mandatory -j1 note

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:46:08 +02:00
Tarik Moussa
b8d6e23adf docs(contracts): fix three errors in processing-unit contract table (U3)
Finding-U3 from doc/reviewer/usability-audit-2026-05-31.md.

Three concrete errors corrected:

1. check_gauss_bonnet() row (was: implies all map types work)
   → now: 'EuclideanMaps/SphericalMaps only' — HyperIdealMaps overload
     is = delete (compile error since external-audit Finding-B fix)

2. enforce_gauss_bonnet() row (same issue)
   → same restriction note added

3. newton_hyper_ideal() preconditions (was: 'lambda0 initialised')
   → WRONG: HyperIdeal computes lengths from b_v, a_e via zeta functions
     internally; lambda0 plays no role.  Correct precondition:
     'no lambda0 needed · no GB pre-check'
   → Added explanation: strictly convex energy (Springborn 2020 Thm 1.3)
     → Newton converges for any targets without a pre-check

Gauss-Bonnet prose section also updated:
  - Examples now show EuclideanMaps/SphericalMaps explicitly
  - HyperIdeal compile-error note added with the correct hyperbolic
    identity Σ(2π-Θ_v) - Area = 2π·χ and why no pre-check is needed
  - Open-mesh note added (GB identity does not hold for boundary meshes)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:44:36 +02:00
Tarik Moussa
b20a835b82 doc(audit): add U10+U11 — CLI parameter docs and extension roadmap
U10: CLI has no parameter reference in README or getting-started.md.
     Documents all 7 current flags with defaults in the audit file so
     a future session can add the table to getting-started.md.

U11: Three useful CLI gaps documented as a roadmap item:
     - --tol / --max-iter: Newton solver tuning, currently hardcoded
     - -g cp_euclidean / -g inversive_distance: Phase-9a models not
       reachable from CLI despite being fully implemented in the library
     Each item has an effort estimate (~30 min / ~2 h) and concrete
     acceptance criteria so a future session can pick it up cold.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:40:46 +02:00
Tarik Moussa
02a3745b67 examples: add real conformal-flattening + CGAL-API examples (U1+U2)
Finding-U1 and Finding-U2 from doc/reviewer/usability-audit-2026-05-31.md.

The existing examples (example_euclidean, example_layout, example_hyper_ideal)
all used the "natural theta" pattern which makes x*=0 trivially the
equilibrium — u_v ≈ 0 everywhere, no deformation. A new user following
these examples saw solver output but not conformal geometry.

New: example_flatten.cpp
  - PRIMARY USE CASE: conformally flatten a mesh to the plane
  - Sets Θ_v = 2π for all interior vertices (flat target)
  - Pins boundary vertices (no Gauss-Bonnet check for open meshes)
  - Demonstrates non-trivial u_v (cathead.obj: range ≈ 2.96, 5 Newton iters)
  - Documents the difference from "natural theta" explicitly

New: example_cgal_api.cpp
  - Demonstrates CGAL::discrete_conformal_map_euclidean (Discrete_conformal_map.h)
  - First runnable CGAL public API example; contrast with internal API
  - Documents the "natural theta" default behaviour and explains why u_v=0
  - Explains when to use CGAL API vs internal API

Both examples registered in code/examples/CMakeLists.txt and compile
cleanly with -DWITH_CGAL=ON.

Updated:
  - example_euclidean.cpp: prominent "TESTING CONVENTION" warning
  - example_layout.cpp: same warning on set_natural_theta helper
  - doc/getting-started.md: example_flatten is now the recommended
    "start here" example; note on natural-theta behaviour added

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:35:37 +02:00
Tarik Moussa
fb9a15ab4a doc(reviewer): add usability audit 2026-05-31
External documentation and usability review of v0.10.0.
9 findings covering documentation correctness, API usability,
and new-user experience.

Critical:
  U1 — All examples show trivial identity map (natural theta),
       not real conformal flattening — new users see no-op output
  U2 — CGAL public API has zero runnable examples

Medium:
  U3 — contracts.md incorrect: check_gauss_bonnet row missing
       HyperIdeal restriction (deleted overload after Finding-B)
  U4 — README still shows v0.9.0 (current: v0.10.0, 277 tests)
  U5 — Discrete_conformal_map.h header comment describes Phase-8a
       state; all 5 entry functions already implemented
  U6 — New gauge-vertex overload (Finding-D) not reflected in
       README or examples — old verbose loop still shown

Minor:
  U7 — CONFORMALLAB_LOW_MEMORY_BUILD absent from getting-started.md
  U8 — CONFORMALLAB_LOW_MEMORY_BUILD absent from README table
  U9 — Layout2D.uv index semantics undocumented (v.idx() contract)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:28:20 +02:00
d725166c6a Merge pull request 'review: external audit v0.10.0 — all 14 findings resolved' (#33) from review/external-audit-2026-05-30 into main
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Reviewed-on: #33
2026-05-30 23:19:58 +00:00
Tarik Moussa
5fbd1b20a5 ci: add /ci-all trigger to run all jobs at once /ci-all
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2026-05-31 01:17:27 +02:00
Tarik Moussa
7df47c0435 ci: switch to commit-message triggers (replace issue_comment)
issue_comment triggers had two problems: Gitea did not reliably fire
them, and the refs/pull/N/head checkout was fragile.  Commit-message
keywords are simpler and guaranteed to work on any push event.

Trigger keywords (add anywhere in the commit message):
  /test-cgal      → CGAL test suite (277 tests, LOW_MEMORY_BUILD)
  /quality-gates  → license/codespell/shellcheck/cgal-conventions
  /docs           → Doxygen build + warning summary
  /links          → Markdown internal link check

test-fast still runs on every push (no keyword needed).

All `issue_comment` event handlers and `refs/pull/N/head` checkouts
removed from all three workflow files.  review/** added to push branch
filters so this PR branch triggers normally.

CLAUDE.md CI table updated.

/test-cgal /quality-gates
2026-05-31 01:17:27 +02:00
Tarik Moussa
018484a94d ci: switch all non-fast jobs to comment triggers
Every CI job except test-fast and mirror-to-codeberg now runs only
when explicitly requested via a PR comment, instead of on every push
or PR sync.  This keeps the Pi runner idle during WIP commits and lets
the author decide when to pay each job's cost.

Trigger commands:
  /test-cgal       → CGAL test suite (277 tests, ~5 min build + 31 s run)
  /quality-gates   → license/codespell/shellcheck/cgal-conventions (~30 s)
  /docs            → Doxygen build + warning summary (~2 min)
  /links           → Markdown internal link check (~10 s)

All comment-triggered jobs check:
  event is issue_comment
  AND comment is on a PR (issue.pull_request != null)
  AND comment body contains the trigger word
  AND checkout uses refs/pull/N/head (not the default branch)

Jobs that stay automatic:
  test-fast         — runs on every push (26 pure-math tests, < 5 s)
  mirror-to-codeberg — unchanged

Jobs that keep additional triggers:
  markdown-links — weekly cron (Mon 05:00 UTC) + workflow_dispatch
  doc-build      — workflow_dispatch (for manual runs outside a PR)

quality-gates drops `needs: test-fast` — it now runs independently
when comment-triggered (caller decides whether test-fast passed first).

CLAUDE.md CI pipeline table updated with all five jobs and their new
trigger descriptions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
2b456abc78 ci(test-cgal): switch to manual comment trigger (/test-cgal on PR)
Instead of triggering on every pull_request push, test-cgal now fires
only when a PR comment contains "/test-cgal".  This prevents the Pi
runner (3-4 GB RAM, swap constantly loaded) from queuing CGAL builds
faster than it can drain them on every WIP commit.

Workflow changes:
- Add `issue_comment: types: [created]` to the top-level `on:` block
- test-cgal `if:` condition:
    event is issue_comment
    AND comment is on a PR (issue.pull_request != null)
    AND comment body contains "/test-cgal"
- Checkout uses `refs/pull/N/head` so the PR branch is checked out
  correctly (issue_comment sets GITHUB_REF to the default branch, not
  the PR branch)

Usage: write "/test-cgal" as a PR comment to trigger the 277-test
CGAL suite.  The build uses CONFORMALLAB_LOW_MEMORY_BUILD=ON (-O0,
no PCH, unity batch 1) and runs in a 2000 MB container.

CLAUDE.md: CI table + status paragraph updated accordingly.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
449c5899c0 ci: re-enable CGAL tests with LOW_MEMORY_BUILD for Raspberry Pi runner
Finding-I from doc/reviewer/external-audit-2026-05-30.md.

Root cause: CGAL+Eigen at -O3 drives cc1plus peak RAM to ~700 MB per
Unity compilation unit (batch size 4) on ARM64.  With the 1600 MB
container limit the 2nd or 3rd TU reliably triggered OOM-kill, so
test-cgal was gated off via `if: false` since 2026-05-26.

Fix: new CMake option CONFORMALLAB_LOW_MEMORY_BUILD=ON applies four
orthogonal memory-saving measures to conformallab_cgal_tests:

  1. -O0 (no debug info): optimizer passes entirely skipped → cc1plus
     peak drops from ~700 MB to ~150-200 MB per TU on ARM64.
     Omitting -g avoids the additional object-file / linker RAM cost.

  2. CONFORMALLAB_USE_PCH=OFF: saves the one-time ~200 MB PCH
     compilation cost; each TU re-parses CGAL headers (fast at -O0).

  3. UNITY_BUILD_BATCH_SIZE=1: one source file per cc1plus invocation,
     removing the "4-file template-explosion" per-unit multiplier.

  4. -Wl,--no-keep-memory (GNU ld): linker releases symbol tables after
     each input file → ~15-25 % less linker RSS.

Verified locally with cmake -DCONFORMALLAB_LOW_MEMORY_BUILD=ON:
  277/277 CGAL tests pass, 31 s runtime (vs 2 s at -O3 — expected;
  tests run 15× slower without optimizer but all correct).

CI workflow changes (cpp-tests.yml):
  - test-cgal re-enabled: `if: github.event_name == 'pull_request'`
  - Configure step adds -DCONFORMALLAB_LOW_MEMORY_BUILD=ON
  - Container memory: 1600m → 2000m (--memory-swap=3000m for 1 GB swap
    headroom), using ~half of the Pi's 3-4 GB while leaving OS margin.

CLAUDE.md updated: new flag added to compile-time options table; CI
status row corrected from DISABLED to active.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
59a26123c8 fix(minor): all five MINOR findings — doc, accuracy, and DRY
MINOR-1 (spherical_functional.hpp:426)
  Wrong comment said "second derivative < 0 for a convex functional".
  The spherical energy is *concave* (NSD Hessian); the monotone-f argument
  applies to both convex and concave functionals equally.  Comment rewritten
  to explain the actual physics: increasing scale increases all angles and
  thus reduces Σ G_v.

MINOR-2 (spherical_functional.hpp:494-495)
  Forward finite difference O(ε) → central finite difference O(ε²):
    old: dft = (sum_Gv(t + fd_eps) - ft) / fd_eps
    new: dft = (sum_Gv(t + fd_eps) - sum_Gv(t - fd_eps)) / (2*fd_eps)
  Same cost when the extra sum_Gv(t - fd_eps) replaces the cached ft.

MINOR-3 (euclidean_functional.hpp, spherical_functional.hpp,
         inversive_distance_functional.hpp)
  New header gauss_legendre.hpp centralises the 10-point Gauss-Legendre
  nodes and weights (gl10_nodes() / gl10_weights()).  The three energy
  functions now use the shared accessors instead of duplicated local
  static arrays.

MINOR-4 (euclidean_functional.hpp, spherical_functional.hpp,
         hyper_ideal_functional.hpp, inversive_distance_functional.hpp)
  halfedge_to_index() centralised in conformal_mesh.hpp.  All four local
  aliases (eucl_hidx, spher_hidx, hidx, id_detail::hidx) now delegate to
  it as one-line wrappers; the aliases are kept for now to avoid a larger
  call-site churn, clearly documented as thin wrappers.

MINOR-5 (clausen.hpp:33-38)
  Added a comment above inits() explaining the intentional off-by-one
  return value and how it interacts with csevl() — matching the Java
  Clausen.inits() / csevl() contract.

277/277 CGAL + 26/26 pure-math tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
2325328f77 test: add end-to-end skewed-torus and synthetic holonomy Re(τ)<0 tests
Finding-H from doc/reviewer/external-audit-2026-05-30.md
(java-port-audit missing-test item 7).

Guards against a regression where compute_period_matrix reverts to
reduce_to_fundamental_domain (no mirror fold) instead of normalizeModulus
(Finding 6 fix, Java-faithful): such a revert would silently produce
Re(τ) < 0 for lattices where the natural generators give a negative
real part.

Two new tests in test_phase7.cpp:

1. SkewedTorus_ReTauNegativeBeforeNorm_FoldedToPositive
   - New mesh: code/data/off/torus_skewed_4x4.off
     Flat 4×4 torus on parallelogram lattice ω₁=(4,0) ω₂=(-1,4);
     16 vertices, 32 triangles, χ=0 (genus 1).
   - Full pipeline: newton_euclidean → cut_graph → euclidean_layout
     → compute_period_matrix(reduce=false) + compute_period_matrix(reduce=true)
   - Asserts: raw Re(τ) < 0, normalized Re(τ) ∈ [0,½], Im(τ) > 0, |τ| ≥ 1

2. SyntheticHolonomy_NegativeReTau_NormalizedToPositive
   - Bypasses mesh; supplies explicit ω₁=(4,0) ω₂=(-1,4) directly
   - Asserts raw τ = -0.25+i (to 1e-10), normalized τ = 0.25+i (to 1e-9)
   - Pin-points the mirror fold: Re(-0.25) → Re(+0.25)

277/277 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
adbf682f0f test: add degenerate-triangle limiting-angle and edge-DOF guard tests
Finding-F and Finding-G from doc/reviewer/external-audit-2026-05-30.md
(java-port-audit missing-test items 1 and 2).

Finding-F — Degenerate triangle: limiting angles (item 1)
  test_euclidean_functional.cpp:
    DegenerateTriangle_LimitingAngles_L{12,23,31}TooLong
      — verifies α_opposite = π, other two = 0, valid = false
      for all three edge-over-long cases
    DegenerateTriangle_GradientPicksUpPiCorner
      — end-to-end mesh test: forces effective l12 >> l23+l31 via
        lambda0, evaluates gradient, asserts G_v3 = π (not 2π from
        a skipped degenerate face) and G_v1=G_v2 = 2π

  test_spherical_functional.cpp:
    DegenerateTriangle_LimitingAngles_S{12,23,31}TooLong
      — same coverage for spherical_angles()

Finding-G — euclidean_hessian edge-DOF guard (item 2)
  test_euclidean_hessian.cpp:
    EdgeDOFGuard_Throws
      — assign_euclidean_all_dof_indices + euclidean_hessian → throw
    EdgeDOFGuard_VertexOnlyDoesNotThrow
      — vertex-only layout → no throw (regression guard)

275/275 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
7534c62c3d fix(gradient-checks): use relative error in all FD check functions
Finding-E from doc/reviewer/external-audit-2026-05-30.md.
Scan also uncovered the same issue in inversive_distance_functional.hpp.

Three functions used absolute error `|analytic - fd| > tol` while the
rest of the library (euclidean_functional, spherical_functional,
euclidean_hessian, hyper_ideal_functional) all use relative error
`|analytic - fd| / max(1, |analytic|) > tol`.

Absolute error is too strict for large gradients (false failures) and
too lenient for small gradients.

Fixed:
  cp_euclidean_functional.hpp  gradient_check_cp_euclidean()
  cp_euclidean_functional.hpp  hessian_check_cp_euclidean()
  inversive_distance_functional.hpp  gradient_check_inversive_distance()

All three now use the relative criterion and accumulate all failures
before returning (ok=false instead of early return on first mismatch).
Default tol updated from 1e-6/1e-5 to 1e-4, matching the Java
FunctionalTest convention used by all other checks in the library.
Error message updated to print rel-err instead of raw diff.

266/266 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
cfbbc1b21f fix(dof-assign): correct "pin before" docs + add gauge-vertex overloads
Finding-D from doc/reviewer/external-audit-2026-05-30.md.

All three DOF-assignment functions iterated over every vertex
unconditionally, overwriting any v_idx set before the call.  The
documentation said "pin before OR after" — the "before" option was
silently wrong (the pin would be overwritten).  For the
inversive-distance variant the doc explicitly said the pre-call pin
would make the function "a no-op for that vertex", which was false.

Changes (three headers):
- euclidean_functional.hpp  assign_euclidean_vertex_dof_indices()
- spherical_functional.hpp  assign_vertex_dof_indices()
- inversive_distance_functional.hpp  assign_inversive_distance_vertex_dof_indices()

For each:
  1. Single-arg overload: doc corrected to "pin AFTER, not before;
     pre-call pins are overwritten"
  2. New two-arg overload accepting a Vertex_index gauge: pins the
     requested vertex (v_idx=-1) in a single pass, preventing the
     user error entirely

Three new GTests in test_euclidean_functional.cpp:
  SingleArg_PinBeforeHasNoEffect        — documents the old pitfall
  TwoArg_GaugeIsPinnedOthersAreSequential — verifies the new overload
  TwoArg_NewtonConvergesWithGaugeOverload — end-to-end correctness

266/266 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
bef5a0ceb7 docs(euclidean-hessian): fix wrong cotangent formula in two comment blocks
Finding-C from doc/reviewer/external-audit-2026-05-30.md.

The box comment at the top and the function-level comment above
euclidean_cot_weights() both stated:

  cot_k = (t_adj1·l123 − t_adj2·t_opp) / denom2   ← WRONG

The correct formula (verified numerically on a 3-4-5 right triangle,
expected cot1=4/3, cot2=3/4, cot3=0) is:

  cot_k = (t_opp · l123 − t_a · t_b) / denom2

where t_opp is the t-value of the edge OPPOSITE vertex k, and t_a/t_b
are the t-values of the two edges ADJACENT to vertex k.

The implementation in euclidean_cot_weights() was already correct;
only the documentation was wrong.

Changes (documentation only, zero code changes):
- Box comment: rewritten with correct formula and explicit per-vertex
  assignment (cot1: t_opp=t23, t_a=t12, t_b=t31; etc.)
- Box comment: added missing ½ factor to Hessian contribution lines
- Function-level comment: corrected to (t_opp·l123 − t_a·t_b)/(8·Area)
  with a pointer to the box comment for the full assignment
- Inline return comment in euclidean_cot_weights(): now shows the
  mapping (cot1: t_opp=t23, t_a=t12, t_b=t31) directly at the formula

263/263 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
46c0b63de8 fix(gauss-bonnet): delete HyperIdeal overloads — wrong identity for hyperbolic metrics
Finding-B from doc/reviewer/external-audit-2026-05-30.md.

The Euclidean Gauss–Bonnet identity Σ(2π−Θ_v) = 2π·χ is ONLY valid for
flat/Euclidean and spherical metrics.  For hyperbolic metrics (HyperIdeal)
the correct identity is Σ(2π−Θ_v) − Area(M) = 2π·χ.  The previously
provided gauss_bonnet_sum(HyperIdealMaps) overload would silently pass the
wrong LHS to check_gauss_bonnet, which would always throw "deficit = ±Area"
for valid hyperbolic targets.

Fix:
- gauss_bonnet_sum(mesh, HyperIdealMaps)        → = delete + explanation comment
- enforce_gauss_bonnet(mesh, HyperIdealMaps&)   → = delete + explanation comment
- Header box comment rewritten with the correct hyperbolic Gauss–Bonnet
  identity and a clear "HyperIdeal: NOT SUPPORTED" section

New test in test_phase6.cpp:
- HyperIdeal_EuclideanSumDiscrepancy_DocumentsWhyCheckIsDeleted
  verifies numerically that the Euclidean sum = 0 but 2π·χ = 4π for a
  regular tetrahedron, documenting the −4π discrepancy that motivated
  the deletion
- Three compile-time static_asserts (SFINAE) confirm the overload is not
  invocable with HyperIdealMaps but remains so with Euclidean/SphericalMaps

263/263 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
faf96ee28c doc(roadmap): add research item for 2/3-ideal hyper-ideal volume formulas
Follow-up to the Finding-A fix (face_energy guard).  The throw is the
correct safe behaviour for now; the mathematically complete solution
requires formulas for semi-ideal and fully-ideal tetrahedra that are
absent from the Java reference.

Adds a structured research entry to research-track.md (Phase 9b+):
- primary references: Kolpakov-Mednykh arXiv:math/0603097, Milnor 1982,
  Vinberg 1985
- acceptance criteria: two new volume functions + gradient-check tests +
  limiting-behaviour continuity witness
- explicit note that the throw in face_energy() must not be removed
  without implementing and testing the replacement formulas

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
9afefcbb7b fix(hyper-ideal): guard face_energy() against unsupported multi-ideal faces
Finding-A from doc/reviewer/external-audit-2026-05-30.md.

Root cause: both the Java reference (HyperIdealFunctional.java:222-231)
and the C++ port silently applied the one-ideal-vertex volume formula
to the first ideal vertex found in a face, ignoring any additional ideal
vertices.  For two or three ideal vertices this produces a wrong energy
value with no diagnostic.

Fix: add an ideal_count guard at the top of face_energy() that throws
std::logic_error for ideal_count >= 2.  The one-ideal (Kolpakov-Mednykh)
and zero-ideal (Meyerhoff/Ushijima) paths are unchanged and correct.

Three new GTests cover the three guard cases:
  MultiIdealGuard_TwoIdealVertices_Throws        (two ideal  → throw)
  MultiIdealGuard_AllThreeIdealVertices_Throws   (all ideal  → throw)
  MultiIdealGuard_ExactlyOneIdeal_DoesNotThrow   (one ideal  → no throw)

262/262 CGAL tests pass, 0 failed.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
Tarik Moussa
7f1a077269 doc(reviewer): add external audit 2026-05-30
Full external code review of v0.10.0 against all math-critical headers
(direct source read, not automated scan). Documents 5 open bugs/API errors,
3 test gaps inherited from java-port-audit.md, 1 architectural CI risk,
and 5 minor findings. Each finding is self-contained with file+line
references, a concrete fix proposal, and acceptance criteria so a new
session can pick up any single finding without prior context.

Key findings:
- FINDING-A (critical): face_energy() wrong for mixed ideal/hyper-ideal configs
- FINDING-B (medium):   Gauss–Bonnet API conceptually wrong for HyperIdeal
- FINDING-C (medium):   cotangent formula in euclidean_hessian.hpp header is wrong
- FINDING-D (medium):   DOF-assignment doc falsely claims "pin before" works
- FINDING-E (medium):   cp_euclidean gradient_check uses absolute not relative error
- FINDING-F/G/H:        three open test gaps from java-port-audit.md
- FINDING-I (arch):     246/272 CGAL tests not gated in CI

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-05-31 01:17:27 +02:00
6b3497f451 Merge pull request 'docs: fix stale test count (243→259) in java-ignore-crossvalidation.md' (#32) from docs/fix-test-count-post-merge into main
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2026-05-30 15:37:39 +00:00
Tarik Moussa
8619043b79 docs(crossvalidation): fix stale test count 243→259 after PRs #29-31 merged
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Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:36:51 +02:00
aec7f489e5 Merge pull request 'feat(euclidean): edge-DOF (cyclic) Hessian — block-FD + full analytic + Java cross-validation' (#29) from docs/java-ignore-crossvalidation into main
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2026-05-30 15:33:36 +00:00
Tarik Moussa
c472748e46 docs(reviewer): refresh §4 to mark Tier-1/3 done (stale TODO removed)
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Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
082649ef40 docs(reviewer): mark Tier-3 done (PR #30); fix duplicated tier table
- Tier-3 (Lawson HyperIdeal) plain + branch-points marked DONE (PR #30,
  test_lawson_hyperideal.cpp); status, §3 HIGH/MED rows, §3b table and §4
  recommended-order updated accordingly.
- Hyperelliptic variant documented as deferred (option c): needs an XML-format
  reader for lawson_curve_source.xml + a port of HyperIdealHyperellipticUtility
  (jReality geometry θ); golden vector is non-symmetric.
- Removed a pre-existing duplicated/stale copy of the tier-table rows.
- Added a status summary (Tier 1  PR #29 · Tier 2 → Phase 9f/13 · Tier 3  PR #30).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
267ae965ab docs(reviewer): Tier-2 exhausted (genus≥2 → Phase 13); Tier-3 Lawson scoped as mini-project
- regular_uniformization.xml / LetterB01_canonical_group.xml are genus≥2
  hyperbolic Fuchsian-group uniformizations (12-edge fundamental polygon), not
  genus-1 → Phase 13, not Tier 2.
- Tier-2 is therefore exhausted (only Wente, deferred to Phase 9f quad/cyclic).
- Tier-3 Lawson HyperIdeal golden vectors require a low-level halfedge genus-2
  multi-edge generator (4 verts/12 edges) + jtem Triangulator replication;
  scoped as a dedicated follow-up.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
822a27da69 feat(euclidean): full analytic edge-DOF (cyclic) Hessian; Tier-2 Wente finding
Upgrades the cyclic Euclidean Hessian from block-FD to closed-form, satisfying
the novelty-statement §3.2 "analytic Hessians, not finite difference" claim for
the Euclidean path.

- euclidean_hessian.hpp: `euclidean_hessian_analytic` — closed-form cyclic
  Hessian from the law-of-cosines angle derivatives
    ∂α_i/∂s_i = ℓ_i²/4A,  ∂α_i/∂s_j = ½cot α_i − ℓ_j²/4A   (Σ_j = 0),
  chained to (u, λ_e) and sign-mapped to the gradient outputs (−α vertex,
  +α_opp edge). Reuses euclidean_cot_weights. Block-FD kept as cross-check.
- newton_solver.hpp: newton_euclidean cyclic path now uses the analytic Hessian.
- tests: CyclicHessian_Analytic_MatchesBlockFD_Tetrahedron — analytic == block-FD
  (1e-6), == gradient FD (1e-5), symmetric (1e-9). Existing cyclic convergence
  oracle still GREEN with the analytic Hessian routed in.

Tier-2 (Wente) finding: wente_torus02.obj is a QUAD mesh (1240 quads) and the
Java golden comes from cyclic (quad-net) uniformization; the C++ period-matrix
pipeline is triangle-based, so a faithful bit-vs-Java τ comparison needs a
quad/cyclic pipeline (Phase 9f). Deferred and documented; golden τ = ½+i√3/2.

244/244 cgal tests pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
ea5f01d73d feat(euclidean): block-FD edge-DOF Hessian → cyclic Newton + Java convergence oracle
Implements the edge-DOF (cyclic) Euclidean Hessian, unblocking the full cyclic
Newton solve, and enables the Java EuclideanCyclicConvergenceTest cross-validation.

- euclidean_hessian.hpp: `euclidean_hessian_block_fd` / `_sym` — per-face 6×6
  block FD over (u1,u2,u3,λ12,λ23,λ31), mirroring hyper_ideal_hessian_block_fd.
  Per-face outputs carry the gradient signs (−α vertex, +α_opp edge), so the
  result equals ∂G/∂x by construction (locality lemma). Analytic vertex-only
  cotangent Hessian unchanged (still used for vertex-only layouts).
- newton_solver.hpp: newton_euclidean routes cyclic layouts (edge DOFs present)
  through the block-FD Hessian; vertex-only path unchanged.
- tests:
  * CyclicCircularEdge_CatHead_JavaXVal (now GREEN) — prescribe φ=π−0.1 on one
    interior edge, solve, assert realised α_opp+α_opp = π−0.1 @1e-9.
  * CyclicCircularEdge_PhiEntersGradient_CatHead — solver-free φ-wiring check.
  * CyclicHessian_BlockFD_MatchesGradientFD_Tetrahedron — Hessian correctness.

243/243 cgal tests pass; vertex-only Euclidean Newton unaffected.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
5d74a94b78 test(euclidean): Tier-1 circular-edge φ cross-validation + cyclic-solve blocker
Build-verified attempt to port the Java EuclideanCyclicConvergenceTest
(cathead, "circular hole edge" φ = π−0.1).

-  GREEN `CyclicCircularEdge_PhiEntersGradient_CatHead`: solver-free
  cross-validation that the circular-edge φ target enters the cyclic edge
  gradient exactly (ΔG_e = −Δφ_e at 1e-12; no other component moves).
- ⏸️ DISABLED `CyclicCircularEdge_CatHead_JavaXVal`: the full Java convergence
  assertion (α_opp+α_opp = π−0.1), kept with golden semantics. Auto-activates
  once the edge-DOF Hessian lands.

Build-verification finding: `newton_euclidean` -> `euclidean_hessian` throws
"edge DOFs are not supported" — the cyclic full solve is blocked by a missing
edge-DOF Euclidean Hessian (gradient supports edge DOFs, analytic Hessian does
not). Spherical convergence (Tier-1 #2) is already covered by test_newton_solver.
Documented in doc/reviewer/java-ignore-crossvalidation.md.

All 13 EuclideanFunctional tests pass (1 disabled).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:32:02 +02:00
Tarik Moussa
41ad4a84d2 docs(reviewer): cross-validation analysis of Java @Ignore tests
Classifies the 22 Java @Ignore'd test files by root cause (ARM64 PETSc
native lib vs logic/known-issue) and by cross-validation value for the
C++ port.

- Notes what PR #27 already locks (math cores + functional-eval oracles)
  to avoid duplication.
- Priority ranking: HIGH (HyperIdeal Lawson convergence golden vector —
  records the exact u*), MEDIUM (genus-1 Wente uniformization, branch-point
  variant), LATER (genus-2/hyperelliptic/Mobius/quasi-isothermic/Schottky),
  NON-ORACLE (Java gaps: testHessian, testDoLayout; ARM64-flaky known issues).
- Documents why the Lawson mesh needs a low-level half-edge generator
  (4 vertices / 12 edges => multi-edges; CGAL add_face cannot build it).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:28:54 +02:00
adfcb7b931 Merge pull request 'feat(geometry): pn_geometry.hpp — Pn projective-metric substrate (jReality port)' (#31) from feat/pn-geometry-substrate into main
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2026-05-30 15:26:23 +00:00
76942418fb Merge pull request 'feat(geometry): pn_geometry.hpp — Pn projective-metric substrate (jReality port)' (#30) from feat/lawson-hyperideal-golden into main
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2026-05-30 15:21:38 +00:00
Tarik Moussa
330515ea90 docs(java-parity): P2/Matrix jReality notes + Phase 9c dependency warning
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- Infrastructure table: add Matrix (→ Eigen inline, done) and P2 rows.
  P2 marked "port inline with Phase 9c" — almost exclusively consumed by
  FundamentalPolygon/CanonicalForm/SurfaceCurve (all Phase 9c), so building
  p2_geometry.hpp as a standalone ahead of 9c would be dead weight.
- Phase 9c rows in the utility table: ⚠️ annotation listing the exact P2.*
  methods needed (makeDirectIsometryFromFrames, projectP3ToP2,
  imbedMatrixP2InP3) plus the P2Big/cpp_dec_float_50 high-precision
  prerequisite for the group-relation product ∏gᵢ = Id.

Ensures a future Phase 9c session starts with full context and does not
discover the jReality/precision dependencies mid-port.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:20:35 +02:00
Tarik Moussa
149da15c64 feat(geometry): pn_geometry.hpp — Pn projective-metric substrate (jReality port)
Ports the small but pervasive de.jreality.math.Pn surface that the Java
algorithmic core uses across every not-yet-ported geometric phase:
HyperbolicLayout, SphericalLayout, FundamentalPolygon (9c), KoebePolyhedron
(10c'), quasi-isothermic (10e), hyperelliptic theta, CircleDomain (11c).
Porting it once unblocks all downstream consumers instead of re-deriving
the metric ad hoc per phase.

pn_geometry.hpp — header-only, Eigen, ~120 LOC:
  PnMetric { EUCLIDEAN=0, ELLIPTIC=+1, HYPERBOLIC=-1 } matching jReality.
  pn_inner_product  — bilinear form per signature.
  pn_norm / pn_dehomogenize / pn_set_to_length / pn_normalize.
  pn_distance_between — Euclidean (spatial), elliptic (acos), hyperbolic (acosh).
  pn_linear_interpolation — affine (E) and slerp (S/H constant-speed geodesic).

HYPERBOLIC uses the timelike-positive ("upper-sheet") convention, identical to
the already-verified projective_math.hpp::hyperbolicDistance; pn_distance_between
is regression-anchored against it in the tests.

test_pn_geometry.cpp — 6 tests, all GREEN:
  InnerProductSignatures, EuclideanDistance, EllipticDistanceIsAngle,
  HyperbolicDistanceClosedFormAndAnchor (+ projective_math.hpp anchor),
  NormAndScaling, LinearInterpolationGeodesic.

doc/roadmap/java-parity.md — new "Infrastructure / support layers" section:
  de.jreality.math.Pn   → pn_geometry.hpp (partial, 6 fns covering core usage)
  de.jreality.math.Rn   → Eigen (no separate port needed)
  MatrixBuilder         → not yet (only needed for hyperelliptic theta)
  conformallab XML types → not planned (GUI persistence, not algorithmic)

246/246 cgal tests pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 17:20:35 +02:00
a993a101e9 Merge pull request 'docs: citation audit (8 mis-citations fixed) + Phases 12/13' (#28) from docs/citation-audit-phases-12-13 into main
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Reviewed-on: #28
2026-05-30 08:06:33 +00:00
03e8000ac6 Merge pull request 'test: Java golden-value oracles for the five DCE math cores + P1-2/P1-3 fixes' (#27) from tests/java-golden-oracles into main
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Reviewed-on: #27
2026-05-30 08:01:01 +00:00
Tarik Moussa
5de95a7a93 test(hyperideal): add Lawson branch-points golden-vector cross-validation
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Second Lawson variant from HyperIdealConvergenceTest...WithBranchPoints.

- make_lawson_branch_points(): base + STELLAR subdivision (Java StellarLinear)
  via CGAL Euler::add_center_vertex — a centre vertex per quad fan-connected to
  its 4 corners (6 centres, 24 triangles, 36 edges). The 6 centres are IDEAL
  vertices (b=0, v_idx=-1); θ_e=π on the 12 base edges, θ_e=π/2 on the 24 spokes.
- BranchPointsGoldenVector_JavaXVal: newton_hyper_ideal converges to the Java
  golden (per symmetry class @1e-4):
    original vertices → 1.3169579
    base edges        → 2.2924317
    spoke edges       → 0   (the π/2 spokes collapse to ideal)
  Key insight: Java's index-based θ split (first 12 edges π, rest π/2) is
  geometric — base edges vs stellar spokes — so the symmetry shortcut applies.

createLawsonHyperelliptic() NOT ported: needs a reader for the Java
conformal-data XML (lawson_curve_source.xml) + a port of
HyperIdealHyperellipticUtility, and its golden vector is not class-symmetric.
Documented as a deferred task.

243/243 cgal tests pass.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-05-30 01:14:46 +02:00